diff --git a/doc/bugs/git-annex-fsck_reports_dead_keys_as_errors/comment_1_cee96c6f5d5d97f6816b9c3524822327._comment b/doc/bugs/git-annex-fsck_reports_dead_keys_as_errors/comment_1_cee96c6f5d5d97f6816b9c3524822327._comment new file mode 100644 index 0000000000..ac9c790184 --- /dev/null +++ b/doc/bugs/git-annex-fsck_reports_dead_keys_as_errors/comment_1_cee96c6f5d5d97f6816b9c3524822327._comment @@ -0,0 +1,43 @@ +[[!comment format=mdwn + username="Ilya_Shlyakhter" + avatar="http://cdn.libravatar.org/avatar/1647044369aa7747829c38b9dcc84df0" + subject="another example of git-annex-fsck reporting dead keys as errors" + date="2020-02-27T21:39:57Z" + content=""" +[[!format sh \"\"\" +(master_env_v174_py36) 16:36 [viral-ngs-benchmarks] $ git annex fsck wdl/quay.io-broadinstitute-viral-ngs-dev_1.25.0-11-g6fe46aa-is-f\ +ix-gatk-mindepth_sha256_20bbb1d96cf58235d325a4ea2def8c3d840d9c2ab5dddf573f9471c57f7414f1/assemble_denovo/tasks_assembly.wdl +fsck wdl/quay.io-broadinstitute-viral-ngs-dev_1.25.0-11-g6fe46aa-is-fix-gatk-mindepth_sha256_20bbb1d96cf58235d325a4ea2def8c3d840d9c2ab\ +5dddf573f9471c57f7414f1/assemble_denovo/tasks_assembly.wdl + ** Required content wdl/quay.io-broadinstitute-viral-ngs-dev_1.25.0-11-g6fe46aa-is-fix-gatk-mindepth_sha256_20bbb1d96cf58235d325a4ea\ +2def8c3d840d9c2ab5dddf573f9471c57f7414f1/assemble_denovo/tasks_assembly.wdl is missing from these repositories: + 449efa47-a0e1-4376-a17f-42c7a1f509d1 -- Benchmarks for viral-ngs, stored on Amazon S3 [viral-ngs-benchmarks-s3] + + ** No known copies exist of wdl/quay.io-broadinstitute-viral-ngs-dev_1.25.0-11-g6fe46aa-is-fix-gatk-mindepth_sha256_20bbb1d96cf58235\ +d325a4ea2def8c3d840d9c2ab5dddf573f9471c57f7414f1/assemble_denovo/tasks_assembly.wdl + These dead repositories used to have copies + 461e3f01-1ff4-43d6-8dfa-71b839a25881 -- crogit runner crogrun_200207_174047__8035____git_9cb32e7230b +failed +(recording state in git...) +git-annex: fsck: 1 failed +(master_env_v174_py36) 16:36 [viral-ngs-benchmarks] $ git annex dead --key `git annex lookupkey wdl/quay.io-broadinstitute-viral-ngs-\ +dev_1.25.0-11-g6fe46aa-is-fix-gatk-mindepth_sha256_20bbb1d96cf58235d325a4ea2def8c3d840d9c2ab5dddf573f9471c57f7414f1/assemble_denovo/ta\ +sks_assembly.wdl` +dead MD5E-s15002--4f40b2c4a2ba81128db649e6096b5fec.wdl ok +(master_env_v174_py36) 16:37 [viral-ngs-benchmarks] $ git annex fsck wdl/quay.io-broadinstitute-viral-ngs-dev_1.25.0-11-g6fe46aa-is-f\ +ix-gatk-mindepth_sha256_20bbb1d96cf58235d325a4ea2def8c3d840d9c2ab5dddf573f9471c57f7414f1/assemble_denovo/tasks_assembly.wdl +fsck wdl/quay.io-broadinstitute-viral-ngs-dev_1.25.0-11-g6fe46aa-is-fix-gatk-mindepth_sha256_20bbb1d96cf58235d325a4ea2def8c3d840d9c2ab\ +5dddf573f9471c57f7414f1/assemble_denovo/tasks_assembly.wdl + ** Required content wdl/quay.io-broadinstitute-viral-ngs-dev_1.25.0-11-g6fe46aa-is-fix-gatk-mindepth_sha256_20bbb1d96cf58235d325a4ea\ +2def8c3d840d9c2ab5dddf573f9471c57f7414f1/assemble_denovo/tasks_assembly.wdl is missing from these repositories: + 449efa47-a0e1-4376-a17f-42c7a1f509d1 -- Benchmarks for viral-ngs, stored on Amazon S3 [viral-ngs-benchmarks-s3] + + ** No known copies exist of wdl/quay.io-broadinstitute-viral-ngs-dev_1.25.0-11-g6fe46aa-is-fix-gatk-mindepth_sha256_20bbb1d96cf58235\ +d325a4ea2def8c3d840d9c2ab5dddf573f9471c57f7414f1/assemble_denovo/tasks_assembly.wdl + These dead repositories used to have copies + 461e3f01-1ff4-43d6-8dfa-71b839a25881 -- crogit runner crogrun_200207_174047__8035____git_9cb32e7230b +failed +(recording state in git...) +git-annex: fsck: 1 failed +\"\"\"]] +"""]]