bug report (copied from email)
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It seems that performing `git annex adjust --unlock-present` or `sync`
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will remove the +x permission from files.
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Steps to reproduce:
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$ mkdir /tmp/ga; cd /tmp/ga; git init ; git annex init
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$ touch a.txt s.sh
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$ chmod +x s.sh
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$ git annex add . && git annex sync
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$ stat -Lc%A s.sh
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-r-xr-xr-x
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$ git annex adjust --unlock-present
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$ stat -c%A s.sh
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-rw-r--r--
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The permission is removed also after a sync, but only in case other
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files have been changed (and adjust called behind the scenes):
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$ chmod +x s.sh
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$ git annex sync
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$ stat -c%A s.sh
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-rwxr-xr-x
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$ git annex drop --force a.txt
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$ stat -c%A s.sh
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-rwxr-xr-x
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$ git annex sync
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$ stat -c%A s.sh
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-rw-r--r--
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I'm using git-annex version: 10.20240430-g5b36e6b4 with
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annex.alwayscommit = false.
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PS: git-annex is so solid that this is the first data-related issue I've
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ever seen. Kudos!
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