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Added a comment: for some reason drop freezes thawn key file before thawing key dir

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yarikoptic 2022-02-24 03:21:54 +00:00 • committed by admin
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[[!comment format=mdwn
username="yarikoptic"
avatar="http://cdn.libravatar.org/avatar/f11e9c84cb18d26a1748c33b48c924b4"
subject="for some reason `drop` freezes thawn key file before thawing key dir"
date="2022-02-24T03:21:54Z"
content="""
which results in permission denied on removal of the key (annex 10.20220127-gf616630) -- why should it freeze the key if it is about to be dropped?
```
(git-annex) [d31548v@discovery7 ds000001]$ git annex get sub-02/anat
get sub-02/anat/sub-02_T1w.nii.gz (from s3-PUBLIC...)
thawing [.git/annex/objects/K0/1M/MD5E-s5736750--4ba3ad9eaa54aab87d97fa0d60b576ad.nii.gz] while under /dartfs-hpc/rc/lab/C/CANlab/labdata/data/tmp/ds000001
D: freezing [.git/annex/objects/K0/1M/MD5E-s5736750--4ba3ad9eaa54aab87d97fa0d60b576ad.nii.gz/MD5E-s5736750--4ba3ad9eaa54aab87d97fa0d60b576ad.nii.gz] while under /dartfs-hpc/rc/lab/C/CANlab/labdata/data/tmp/ds000001
D: freezing [.git/annex/objects/K0/1M/MD5E-s5736750--4ba3ad9eaa54aab87d97fa0d60b576ad.nii.gz] while under /dartfs-hpc/rc/lab/C/CANlab/labdata/data/tmp/ds000001
ok
get sub-02/anat/sub-02_inplaneT2.nii.gz (from s3-PUBLIC...)
thawing [.git/annex/objects/49/7G/MD5E-s718835--da6846d3f0a6c0fe29bb1bf22c796354.nii.gz] while under /dartfs-hpc/rc/lab/C/CANlab/labdata/data/tmp/ds000001
D: freezing [.git/annex/objects/49/7G/MD5E-s718835--da6846d3f0a6c0fe29bb1bf22c796354.nii.gz/MD5E-s718835--da6846d3f0a6c0fe29bb1bf22c796354.nii.gz] while under /dartfs-hpc/rc/lab/C/CANlab/labdata/data/tmp/ds000001
D: freezing [.git/annex/objects/49/7G/MD5E-s718835--da6846d3f0a6c0fe29bb1bf22c796354.nii.gz] while under /dartfs-hpc/rc/lab/C/CANlab/labdata/data/tmp/ds000001
ok
(recording state in git...)
(git-annex) [d31548v@discovery7 ds000001]$ git annex drop sub-02/anat
drop sub-02/anat/sub-02_T1w.nii.gz thawing [.git/annex/objects/K0/1M/MD5E-s5736750--4ba3ad9eaa54aab87d97fa0d60b576ad.nii.gz/MD5E-s5736750--4ba3ad9eaa54aab87d97fa0d60b576ad.nii.gz] while under /dartfs-hpc/rc/lab/C/CANlab/labdata/data/tmp/ds000001
D: freezing [.git/annex/objects/K0/1M/MD5E-s5736750--4ba3ad9eaa54aab87d97fa0d60b576ad.nii.gz/MD5E-s5736750--4ba3ad9eaa54aab87d97fa0d60b576ad.nii.gz] while under /dartfs-hpc/rc/lab/C/CANlab/labdata/data/tmp/ds000001
thawing [.git/annex/objects/K0/1M/MD5E-s5736750--4ba3ad9eaa54aab87d97fa0d60b576ad.nii.gz] while under /dartfs-hpc/rc/lab/C/CANlab/labdata/data/tmp/ds000001
git-annex: .git/annex/objects/K0/1M/MD5E-s5736750--4ba3ad9eaa54aab87d97fa0d60b576ad.nii.gz/MD5E-s5736750--4ba3ad9eaa54aab87d97fa0d60b576ad.nii.gz: removeLink: permission denied (Permission denied)
failed
drop sub-02/anat/sub-02_inplaneT2.nii.gz thawing [.git/annex/objects/49/7G/MD5E-s718835--da6846d3f0a6c0fe29bb1bf22c796354.nii.gz/MD5E-s718835--da6846d3f0a6c0fe29bb1bf22c796354.nii.gz] while under /dartfs-hpc/rc/lab/C/CANlab/labdata/data/tmp/ds000001
D: freezing [.git/annex/objects/49/7G/MD5E-s718835--da6846d3f0a6c0fe29bb1bf22c796354.nii.gz/MD5E-s718835--da6846d3f0a6c0fe29bb1bf22c796354.nii.gz] while under /dartfs-hpc/rc/lab/C/CANlab/labdata/data/tmp/ds000001
thawing [.git/annex/objects/49/7G/MD5E-s718835--da6846d3f0a6c0fe29bb1bf22c796354.nii.gz] while under /dartfs-hpc/rc/lab/C/CANlab/labdata/data/tmp/ds000001
git-annex: .git/annex/objects/49/7G/MD5E-s718835--da6846d3f0a6c0fe29bb1bf22c796354.nii.gz/MD5E-s718835--da6846d3f0a6c0fe29bb1bf22c796354.nii.gz: removeLink: permission denied (Permission denied)
failed
drop: 2 failed
```
as a workaround I added `-R` to my thawing script so thawing of keydir re-thaws the key as well, but that doesn't feel right.
edit: interestingly, `drop` also thaws the file in index (e.g. `./sub-02/anat/sub-02_inplaneT2.nii.gz` in my case) -- why does it in \"indirect\" mode? hm...
"""]]