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doc/bugs/Repo_manipulation_breaks_git-annex_drop_--all.mdwn
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doc/bugs/Repo_manipulation_breaks_git-annex_drop_--all.mdwn
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I am working with a bare repository to transfer two keys from a custom backend to and from a special remote. This seems to be working fine.
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In order to be able to make use of export remotes (exporttree=yes), I need to be able to specific a tree to be exported. For technical reasons, I want to keep using a bare repository, and use a `hash-object`, `update-index`, and `write-tree` manually in order to create a tree. The Python code snippet that does this looks like this:
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```
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for key, prefix, fname in (
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# the prefixes are constant hashdir-lower
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(RepoAnnexGitRemote.refs_key, 'a11/1c8', '.datalad/dotgit/refs'),
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(RepoAnnexGitRemote.repo_export_key, '6b2/c13',
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'.datalad/dotgit/repo-export.zip')):
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# create a blob for the annex link
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out = repo._git_runner.run(
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['git', 'hash-object', '-w', '--stdin'],
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stdin=bytes(
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f'../../.git/annex/objects/{prefix}/{key}/{key}', 'utf-8'),
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protocol=StdOutCapture)
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linkhash = out['stdout'].strip()
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# place link into a tree
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out = repo._git_runner.run(
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['git', 'update-index', '--add', '--cacheinfo', '120000',
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linkhash, fname],
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protocol=StdOutCapture)
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# write the complete tree, and return ID
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out = repo._git_runner.run(
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['git', 'write-tree'],
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protocol=StdOutCapture)
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exporttree = out['stdout'].strip()
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```
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It essentially creates the two blobs for the annex links, puts them together in a tree, and writes it to the repo.
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However, after this code ran, git-annex is not longer operating properly in the bare repo:
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```
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% git annex drop --all
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fatal: relative path syntax can't be used outside working tree
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fatal: relative path syntax can't be used outside working tree
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fatal: relative path syntax can't be used outside working tree
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fatal: relative path syntax can't be used outside working tree
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fatal: relative path syntax can't be used outside working tree
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fatal: relative path syntax can't be used outside working tree
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fatal: relative path syntax can't be used outside working tree
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fatal: relative path syntax can't be used outside working tree
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fatal: relative path syntax can't be used outside working tree
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fatal: relative path syntax can't be used outside working tree
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fatal: relative path syntax can't be used outside working tree
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git-annex: fd:21: Data.ByteString.hGetLine: end of file
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```
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(fatal error messages are from cat-file batch calls inside)
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When I comment this code out, everything goes back to normal. It seems to makes no difference whether I follow the problematic code up with a `commit-tree` and `update-ref` to actually have the mainline branch point to a commit with that tree. It also seems to make no difference, when I explicitly `setpresentkey <key> <here> 0`.
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AFAICS this creates the same records as if I would have done this in a regular worktree using high-level git-annex tooling. Other git-annex commands like `fsck` seem to be working fine. If a create a branch with that tree, also `findref` seems to be working properly.
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Is this a bug, or am I doing something wrong? Thanks in advance for your time!
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