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[[!comment format=mdwn
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username="joey"
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subject="""comment 1"""
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date="2015-02-04T17:19:46Z"
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content="""
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git-annex should have no difficulty doing that, and in fact its test
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suite includes some adds of files in subdirs.
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The most likely reason for this behavior would be if you have configured
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a `.gitignore` file (or other method of configuring gitignore) to
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exclude the file you want to add. If so, "git annex add --force
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mydir/myfile" would override the gitignore.
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Internally, git-annex add runs "git ls-files --others --exclude-standard"
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and passes it the files/dirs you specified to add, and then adds
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the files that command lists. So you can run that command and see
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what it lists too.
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"""]]
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