Merge branch 'master' of ssh://git-annex.branchable.com
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[[!comment format=mdwn
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username="Ilya_Shlyakhter"
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avatar="http://cdn.libravatar.org/avatar/1647044369aa7747829c38b9dcc84df0"
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subject="comment 2"
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date="2018-10-29T19:48:36Z"
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content="""
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annex.pidlock is not set in the config file. \"Do you see git-annex displaying multiple concurrent actions at the same time?\" -- displaying where? I was just looking at 'top'.
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There are some keys to which multiple git-annex symlink point.
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"""]]
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26
doc/bugs/git-annex-migrate_fails.mdwn
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26
doc/bugs/git-annex-migrate_fails.mdwn
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Migrating from a URL key to an MD5E key (after addurl --fast using an external special remote) fails:
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(master_env_py27_v28) [03:15 PM /data/ilya-work]$ git annex --verbose --debug migrate A4.taxfilt.bam
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[2018-10-29 15:15:55.197015] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","ls-files","--cached","-z","--","A4.taxfilt.bam"]
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[2018-10-29 15:15:55.232756] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","check-attr","-z","--stdin","annex.backend","annex.numcopies","annex.largefiles","--"]
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[2018-10-29 15:15:55.232934] read: git ["--version"]
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[2018-10-29 15:15:55.233841] process done ExitSuccess
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migrate A4.taxfilt.bam failed
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[2018-10-29 15:15:55.263931] process done ExitSuccess
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git-annex: migrate: 1 failed
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(master_env_py27_v28) [03:15 PM /data/ilya-work]$ git annex info A4.taxfilt.bam
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file: A4.taxfilt.bam
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size: 12.75 megabytes
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key: URL-s12750247--dx://file-FJZjKx800YQPJ5j589Q2Kfzv/A4.taxfilt.bam
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present: true
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(master_env_py27_v28) [03:16 PM /data/ilya-work]$ git annex whereis A4.taxfilt.bam
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whereis A4.taxfilt.bam (2 copies)
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0928dfcc-4dbe-4c24-a5a0-ac05c4a2c829 -- ilyas_main_repo [here]
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6803648c-87e6-41ef-9570-48adb13ff59a -- [mydx]
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mydx: dx://file-FJZjKx800YQPJ5j589Q2Kfzv/A4.taxfilt.bam
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ok
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(master_env_py27_v28) [03:16 PM /data/ilya-work]$ git annex --verbose --debug migrate A4.taxfilt.bam --backend MD5E
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[2018-10-29 15:17:15.621264] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","ls-files","--cached","-z","--","A4.taxfilt.bam"]
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migrate A4.taxfilt.bam failed
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git-annex: migrate: 1 failed
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