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I upgraded another one of my git-annex clones. The upgrade worked fine (i.e.
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according to the manual) on two other clones before, but this time something is
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different.
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After 'git pull' and 'git annex upgrade', which took a long time and seemed to
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have succeeded, there are no staged changes in git. Instead there are lots of
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untracked directories in .git-annex. Aside from that, nothing seems to be
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wrong.
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At the time I had git-annex version 0.20110329 and I've been using the SHA1
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backend since version 1.
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