From bd30c428ee2b0620f14b9a423185f91bbb8caafa Mon Sep 17 00:00:00 2001 From: Ilya_Shlyakhter Date: Tue, 23 Jul 2019 16:03:27 +0000 Subject: [PATCH] added bug report re: git-annex-fsck failing with "thread blocked indefinitely" --- ...efinitely_in_an_STM_transaction__34__.mdwn | 47 +++++++++++++++++++ 1 file changed, 47 insertions(+) create mode 100644 doc/bugs/git-annex-fsck_fails___34__thread_blocked_indefinitely_in_an_STM_transaction__34__.mdwn diff --git a/doc/bugs/git-annex-fsck_fails___34__thread_blocked_indefinitely_in_an_STM_transaction__34__.mdwn b/doc/bugs/git-annex-fsck_fails___34__thread_blocked_indefinitely_in_an_STM_transaction__34__.mdwn new file mode 100644 index 0000000000..cf7fa3157f --- /dev/null +++ b/doc/bugs/git-annex-fsck_fails___34__thread_blocked_indefinitely_in_an_STM_transaction__34__.mdwn @@ -0,0 +1,47 @@ +### Please describe the problem. + +Running git-annex-fsck fails with the error "thread blocked indefinitely in an STM transaction" + +### What steps will reproduce the problem? + + +### What version of git-annex are you using? On what operating system? +git-annex version: 7.20190708-gbc74eb1 +Amazon Linux 2 ( Linux ip-172-31-87-151.ec2.internal 4.14.133-113.105.amzn2.x86_64 #1 SMP Wed Jul 10 16:57:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux ) + +### Please provide any additional information below. + +[[!format sh """ +# If you can, paste a complete transcript of the problem occurring here. +# If the problem is with the git-annex assistant, paste in .git/annex/daemon.log +git annex fsck --fast -J66 --json --json-error-messages + +... +git-annex: thread blocked indefinitely in an STM transaction + + + +(master_env_v149_py36) 11:56 [viral-ngs-benchmarks] $ git annex version +git-annex version: 7.20190708-gbc74eb1 +build flags: Assistant Webapp Pairing S3 WebDAV Inotify DBus DesktopNotify TorrentParser MagicMime Feeds Testsuite +dependency versions: aws-0.21.1 bloomfilter-2.0.1.0 cryptonite-0.25 DAV-1.3.3 feed-1.0.1.0 ghc-8.4.2 http-client-0.5.14 persistent-sql\ +ite-2.9.2 torrent-10000.1.1 uuid-1.3.13 yesod-1.6.0 +key/value backends: SHA256E SHA256 SHA512E SHA512 SHA224E SHA224 SHA384E SHA384 SHA3_256E SHA3_256 SHA3_512E SHA3_512 SHA3_224E SHA3_2\ +24 SHA3_384E SHA3_384 SKEIN256E SKEIN256 SKEIN512E SKEIN512 BLAKE2B256E BLAKE2B256 BLAKE2B512E BLAKE2B512 BLAKE2B160E BLAKE2B160 BLAKE\ +2B224E BLAKE2B224 BLAKE2B384E BLAKE2B384 BLAKE2S256E BLAKE2S256 BLAKE2S160E BLAKE2S160 BLAKE2S224E BLAKE2S224 BLAKE2SP256E BLAKE2SP256\ + BLAKE2SP224E BLAKE2SP224 SHA1E SHA1 MD5E MD5 WORM URL +remote types: git gcrypt p2p S3 bup directory rsync web bittorrent webdav adb tahoe glacier ddar hook external +operating system: linux x86_64 +supported repository versions: 5 7 +upgrade supported from repository versions: 0 1 2 3 4 5 6 +local repository version: 5 +(master_env_v149_py36) 12:00 [viral-ngs-benchmarks] $ uname -a +Linux ip-172-31-87-151.ec2.internal 4.14.133-113.105.amzn2.x86_64 #1 SMP Wed Jul 10 16:57:02 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux +( + +# End of transcript or log. +"""]] + +### Have you had any luck using git-annex before? (Sometimes we get tired of reading bug reports all day and a lil' positive end note does wonders) + +