Added a comment: solved the problem
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[[!comment format=mdwn
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username="https://www.google.com/accounts/o8/id?id=AItOawn9JRcJ_69McoLFe5-dvTMdfS9rJpGy6JI"
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nickname="Warren"
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subject="solved the problem"
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date="2013-03-30T00:13:29Z"
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content="""
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Just wanted to let future searchers know that I solved this problem by finding the most recent commit of the master that was not merged with the git-annex branch and hard resetting to that. I hard reset the git-annex branch to its most recent separate commit and now things seem to working again. By hard reset I mean the command \"git reset --hard <commit>\".
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"""]]
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