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Added a comment: reconfirming with new build option

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yarikoptic 2018-11-19 21:33:34 +00:00 • committed by admin
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doc/bugs/multiple_ssh_prompts__44___and_thread_blocked_indefinitely_in_an___63____63____63___transaction/comment_31_e2cc841198c91709980cc2b2a8297925._comment Normal file
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[[!comment format=mdwn
username="yarikoptic"
avatar="http://cdn.libravatar.org/avatar/f11e9c84cb18d26a1748c33b48c924b4"
subject="reconfirming with new build option"
date="2018-11-19T21:33:34Z"
content="""
> Also it would be good to build git-annex with the DebugLocks build flag described above, and the unfixed concurrent-output, and verify that the debug info when it crashes shows it crashed in Message.hs or concurrent-output.
Ok, did
[[!format patch \"\"\"
$ git co -b debug-locks 872af2b2f1049e4eecf274ac70caf99a367f3818^
$ git cherry-pick 9127fe4821a9d4aeba18c8d240c9df71b54c1353
$ # vim Makefile to add that flag
$ git diff
diff --git a/Makefile b/Makefile
index 149309f59..2d87b34e0 100644
--- a/Makefile
+++ b/Makefile
@@ -21,7 +21,7 @@ build: $(all)
tmp/configure-stamp: Build/TestConfig.hs Build/Configure.hs
if [ \"$(BUILDER)\" = ./Setup ]; then ghc --make Setup; fi
if [ \"$(BUILDER)\" != stack ]; then \
- $(BUILDER) configure --ghc-options=\"$(shell Build/collect-ghc-options.sh)\"; \
+ $(BUILDER) configure --ghc-options=\"$(shell Build/collect-ghc-options.sh)\" -fDebugLocks; \
else \
$(BUILDER) setup; \
fi
$ ../bisect-git-annex ../git-annex-dev.img ../bisect-git-annex-lock.sh
...
get sub-amit/ses-20180508/anat/sub-amit_ses-20180508_acq-MPRAGE_T1w.nii.gz get sub-amit/ses-20180508/dwi/sub-amit_ses-20180508_acq-DTIX30Xp2Xs4_dwi.nii.gz (from origin...)
(from origin...)
MVar deadlock detected CallStack (from HasCallStack):
debugLocks, called at Messages.hs:265:12 in main:Messages
STM deadlock detected CallStack (from HasCallStack):
debugLocks, called at Messages.hs:265:12 in main:Messages
MVar deadlock detected CallStack (from HasCallStack):
debugLocks, called at ./Annex/Ssh.hs:201:37 in main:Annex.Ssh
STM deadlock detected CallStack (from HasCallStack):
debugLocks, called at ./Annex/Ssh.hs:201:37 in main:Annex.Ssh
thread blocked indefinitely in an MVar operation
thread blocked indefinitely in an STM transaction
Unable to access these remotes: origin
Unable to access these remotes: origin
Try making some of these repositories available:
Try making some of these repositories available:
6384a551-a41d-4290-b186-9258befede97 -- bids@rolando:/inbox/BIDS/dbic/QA
7d9ed214-3e5f-4cc8-ac88-f397145b2d4c -- yoh@falkor:/srv/datasets.datalad.org/www/dbic/QA [origin]
ba8f2cea-f229-422c-82be-6580e5e07ed5 -- yoh@smaug:/mnt/datasets/datalad/crawl/dbic/QA
6384a551-a41d-4290-b186-9258befede97 -- bids@rolando:/inbox/BIDS/dbic/QA
failed
7d9ed214-3e5f-4cc8-ac88-f397145b2d4c -- yoh@falkor:/srv/datasets.datalad.org/www/dbic/QA [origin]
ba8f2cea-f229-422c-82be-6580e5e07ed5 -- yoh@smaug:/mnt/datasets/datalad/crawl/dbic/QA
failed
git-annex: thread blocked indefinitely in an STM transaction
E: thread blocked indefinitely
\"\"\"]]
"""]]