todo
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@ -325,6 +325,9 @@ files to be unlocked, while the indirect upgrades don't touch the files.
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because the timestamp has changed. Getting a smudged file can also
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cause this. Avoid this by preserving timestamp of smudged files
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when manipulating.
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* Clean filter should check if the filename was already in use by an old
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key. The annex object for it may have been modified due to hard link, and
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that should be cleaned up when the new version is added.
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* Reconcile staged changes into the associated files database, whenever
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the database is queried.
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* See if the cases where the Keys database is not used can be
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