Add --debug option. Closes: #627499
This takes advantage of the debug logging done by missingh, and I added my own debug messages for executeFile calls. There are still some other low-level ways git-annex runs stuff that are not shown by debugging, but this gets most of it easily.
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@ -330,6 +330,10 @@ Many git-annex commands will stage changes for later `git commit` by you.
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Enable verbose logging.
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* --debug
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Show debug messages.
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* --from=repository
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Specifies a repository that content will be retrieved from, or that
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