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doc/bugs/multiple_ssh_prompts__44___and_thread_blocked_indefinitely_in_an___63____63____63___transaction/comment_17_0e4efb1686564f4d8e834b1e0843d397._comment Normal file
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[[!comment format=mdwn
username="yarikoptic"
avatar="http://cdn.libravatar.org/avatar/f11e9c84cb18d26a1748c33b48c924b4"
subject="comment 17"
date="2018-11-16T22:12:58Z"
content="""
ok, not sure yet if it is git-annex change or ghc change or both here is the point where things changed radically:
going from 6.20180519+gitgf6f199be3 build which used ghc 8.0.1-17+b1 and where we had a nice single ssh password prompt:
[[!format sh \"\"\"
[yhalchen@discovery7 QA]$ PATH=$HOME/6.20180519+gitgf6f199be3-1~ndall+1/usr/lib/git-annex.linux:$PATH git annex get -J2 sub-*
get sub-amit/ses-20180508/anat/sub-amit_ses-20180508_acq-MPRAGE_T1w.nii.gz get sub-amit/ses-20180508/dwi/sub-amit_ses-20180508_acq-DTIX30Xp2Xs4_dwi.nii.gz (from origin...)
(from origin...)
yoh@falkor.datalad.org's password:
\"\"\"]]
to the next build I have 6.20180521+gitg0e3bebd71 which used ghc 8.0.2-11 and with which locking madness starts to kick in:
[[!format sh \"\"\"
[yhalchen@discovery7 QA]$ PATH=$HOME/6.20180521+gitg0e3bebd71-1~ndall+1/usr/lib/git-annex.linux:$PATH git annex get -J2 sub-*
get sub-amit/ses-20180508/anat/sub-amit_ses-20180508_acq-MPRAGE_T1w.nii.gz get sub-amit/ses-20180508/dwi/sub-amit_ses-20180508_acq-DTIX30Xp2Xs4_dwi.nii.gz (transfer already in progress, or unable to take transfer lock)
Unable to access these remotes: origin
Try making some of these repositories available:
6384a551-a41d-4290-b186-9258befede97 -- bids@rolando:/inbox/BIDS/dbic/QA
7d9ed214-3e5f-4cc8-ac88-f397145b2d4c -- yoh@falkor:/srv/datasets.datalad.org/www/dbic/QA [origin]
ba8f2cea-f229-422c-82be-6580e5e07ed5 -- yoh@smaug:/mnt/datasets/datalad/crawl/dbic/QA
failed
get sub-amit/ses-20180508/func/sub-amit_ses-20180508_task-rest_acq-p2_bold.nii.gz (from origin...)
(from origin...)
thread blocked indefinitely in an STM transaction
thread blocked indefinitely in an MVar operation
Unable to access these remotes: origin
Unable to access these remotes: origin
Try making some of these repositories available:
6384a551-a41d-4290-b186-9258befede97 -- bids@rolando:/inbox/BIDS/dbic/QA
7d9ed214-3e5f-4cc8-ac88-f397145b2d4c -- yoh@falkor:/srv/datasets.datalad.org/www/dbic/QA [origin]
ba8f2cea-f229-422c-82be-6580e5e07ed5 -- yoh@smaug:/mnt/datasets/datalad/crawl/dbic/QA
failed
Try making some of these repositories available:
6384a551-a41d-4290-b186-9258befede97 -- bids@rolando:/inbox/BIDS/dbic/QA
7d9ed214-3e5f-4cc8-ac88-f397145b2d4c -- yoh@falkor:/srv/datasets.datalad.org/www/dbic/QA [origin]
ba8f2cea-f229-422c-82be-6580e5e07ed5 -- yoh@smaug:/mnt/datasets/datalad/crawl/dbic/QA
failed
git-annex: thread blocked indefinitely in an STM transaction
\"\"\"]]
I hope that would give enough clues, Joey?
"""]]