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It would be nice to have a simple command that can safely turn a plain directory into a git-annex direct repository.
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This is the use case:
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* I use git-annex to manage a directory full of files, including many huge files.
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* These files are also stored in an S3 repository.
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* It takes days to download those files.
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* I have another computer with a directory that contains 80% of these files.
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* I would like to turn that directory into a git-annex repository.
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* I would like to download only the 20% missing files.
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What I would like to have a command that turns that directory into a direct repository without dealing with the gory details I will describe later. This command could be something like
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```
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$ cd Documents
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$ git annex setup --direct example.org:~/annex/Documents.git
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```
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This command should take care of:
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* cloning the git repository `example.org:~/annex/Documents.git` to `.git`,
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* switching to direct mode (carefully setting up all the needed branches),
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* create symlinks _only_ for the missing files,
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* record that the existing files are present in this repository.
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These are just the main problems that one faces in this task; they are mostly caused by the fact that the repo is in direct mode.
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There are workarounds, like those sketched at <http://unix.stackexchange.com/questions/75557/init-gix-annex-additional-repo-with-existing-files>, but the all are time-consuming and fragile.
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