annex.skipunknown with transition plan
Added annex.skipunknown git config, that can be set to false to change the behavior of commands like `git annex get foo*`, to not skip over files/dirs that are not checked into git and are explicitly listed in the command line. Significant complexity was needed to handle git-annex add, which uses some git ls-files calls, but needs to not use --error-unmatch because of course the files are not known to git. annex.skipunknown is planned to change to default to false in a git-annex release in early 2022. There's a todo for that.
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@ -31,7 +31,7 @@ run _ file = seekSingleGitFile file >>= \case
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-- But, this plumbing command does not recurse through directories.
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seekSingleGitFile :: FilePath -> Annex (Maybe RawFilePath)
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seekSingleGitFile file = do
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(l, cleanup) <- inRepo (Git.LsFiles.inRepo [toRawFilePath file])
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(l, cleanup) <- inRepo (Git.LsFiles.inRepo [] [toRawFilePath file])
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r <- case l of
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(f:[]) | takeFileName (fromRawFilePath f) == takeFileName file ->
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return (Just f)
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