annex.skipunknown with transition plan
Added annex.skipunknown git config, that can be set to false to change the behavior of commands like `git annex get foo*`, to not skip over files/dirs that are not checked into git and are explicitly listed in the command line. Significant complexity was needed to handle git-annex add, which uses some git ls-files calls, but needs to not use --error-unmatch because of course the files are not known to git. annex.skipunknown is planned to change to default to false in a git-annex release in early 2022. There's a todo for that.
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@ -51,8 +51,10 @@ seek o = startConcurrency commandStages $ do
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NoBatch -> withKeyOptions
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(keyOptions o) (autoMode o)
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(commandAction . Command.Move.startKey (fromToOptions o) Command.Move.RemoveNever)
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(withFilesInGit $ commandAction . go)
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=<< workTreeItems (copyFiles o)
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(withFilesInGit ww $ commandAction . go)
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=<< workTreeItems ww (copyFiles o)
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where
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ww = WarnUnmatchLsFiles
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{- A copy is just a move that does not delete the source file.
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- However, auto mode avoids unnecessary copies, and avoids getting or
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