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Ilya_Shlyakhter 2019-05-14 19:23:33 +00:00 • committed by admin
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[[!comment format=mdwn
username="Ilya_Shlyakhter"
avatar="http://cdn.libravatar.org/avatar/1647044369aa7747829c38b9dcc84df0"
subject="comment 5"
date="2019-05-14T19:23:33Z"
content="""
Still seeing this bug with the latest git-annex, during a parallel git-annex-add:
add pipelines/cromwell-executions/assemble_denovo/ffcbdd7a-f4b2-427f-9aee-b286ff66e42c/call-refine_2x_and_plot/execution/gatk/resource\
s/exampleBAM.bam.bai ok
add pipelines/cromwell-executions/assemble_denovo/ffcbdd7a-f4b2-427f-9aee-b286ff66e42c/call-refine_2x_and_plot/execution/script ok
(recording state in git...)
add pipelines/cromwell-executions/assemble_denovo/3cbe618f-fcb6-4afd-8342-cec631894c66/call-scaffold/execution/stderr
git-annex: .git/annex/othertmp/ingest-stderr61432-7295: rename: permission denied (Permission denied)
failed
add pipelines/cromwell-executions/assemble_denovo/3f716be9-b496-4f08-9bc9-5dc5e65e0111/call-assemble/execution/stderr
git-annex: .git/annex/othertmp/ingest-stderr61432-7830: rename: permission denied (Permission denied)
failed
add pipelines/cromwell-executions/assemble_denovo/4099e3b6-30e8-47cd-8daf-f178cf15bbc2/call-scaffold/execution/stderr.background
git-annex: .git/annex/othertmp/inge61432-8197: rename: permission denied (Permission denied)
failed
add pipelines/cromwell-executions/assemble_denovo/4794a803-878a-4d8b-8ef1-ffff68278d74/call-scaffold/execution/LASV_NGA_2018_1286.lLAS\
V_pool1.7.assembly1-trinity-spades.intermediate_gapfill.fasta
git-annex: .git/annex/othertmp/ingest-LASV_NGA_2018_1286.lLASV_pool1.7.assembly1-trinity-spades61432-8746.interm: rename: permission d\
enied (Permission denied)
failed
"""]]