Merge branch 'master' of ssh://git-annex.branchable.com into master
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[[!comment format=mdwn
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username="yarikoptic"
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avatar="http://cdn.libravatar.org/avatar/f11e9c84cb18d26a1748c33b48c924b4"
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subject="comment 4"
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date="2020-10-11T13:51:28Z"
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content="""
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the mystery is that to our knowledge we do close the stdin (and stdout) of [git-annex process right before](https://github.com/datalad/datalad/blob/master/datalad/cmd.py#L1339), so pipe should have not remained open, unless something else may be somehow keeps it open... And I cannot reproduce the bug ATM neither locally or on smaug where I did prepare you the reproduced case!
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Indeed though I agree that pretty much any timeout could not generally be \"sufficient\". That is why we need to figure out what is happening/why some times batched processes do not quit. Either the later \"reproducer\" was exactly the same situation as in the original reported (where it was a few out of 1000s of batched processes) -- I do not know. may be there are multiple issues.
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"""]]
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[[!comment format=mdwn
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username="Lukey"
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avatar="http://cdn.libravatar.org/avatar/c7c08e2efd29c692cc017c4a4ca3406b"
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subject="comment 1"
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date="2020-10-11T14:01:35Z"
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content="""
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First, you should try \"git annex get\" on that file and see if works. If it simply outputs nothing, then you indeed somehow committed a hash link. Use \"git log --stat\" and look for the commit that changed the file, then copy the commit-id of the commit before that. Then you can get the old version of the file with \"git checkout <commit-id> -- <file>\".
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"""]]
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[[!comment format=mdwn
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username="Lukey"
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avatar="http://cdn.libravatar.org/avatar/c7c08e2efd29c692cc017c4a4ca3406b"
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subject="comment 1"
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date="2020-10-11T14:08:27Z"
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content="""
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I don't think your problem is related to the \"git fsck\" error. Also, it doesn't look like the failure of \"git annex repair\" is related to the \"git fsck\" error either.
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What does \"git status\" say in the repo that is missing files?
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"""]]
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[[!comment format=mdwn
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username="Lukey"
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avatar="http://cdn.libravatar.org/avatar/c7c08e2efd29c692cc017c4a4ca3406b"
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subject="comment 1"
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date="2020-10-11T14:17:47Z"
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content="""
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I guess commit de3d7d044d237999c0a16eb51c79625f904dd60d could be the culprit as the list of files could become large if \"git cat-file\" has a large delay between the request and the response.
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"""]]
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