initial report on problem with v6 in subdirectory
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### Please describe the problem.
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### What steps will reproduce the problem?
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### What version of git-annex are you using? On what operating system?
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### Please provide any additional information below.
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[[!format sh """
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$> mkdir repo; cd repo; git init; git annex init; git annex upgrade; mkdir -p subdir; cd subdir; touch file; git add file
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Initialized empty Git repository in /tmp/repo/.git/
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init ok
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(recording state in git...)
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upgrade (v5 to v6...) ok
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git-annex: git: createProcess: runInteractiveProcess: chdir: does not exist (No such file or directory)
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error: external filter 'git-annex smudge --clean %f' failed 1
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error: external filter 'git-annex smudge --clean %f' failed
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$> echo $?; git status
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0
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git-annex: git: createProcess: runInteractiveProcess: chdir: does not exist (No such file or directory)
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error: external filter 'git-annex smudge --clean %f' failed 1
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error: external filter 'git-annex smudge --clean %f' failed
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On branch master
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Initial commit
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Changes to be committed:
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(use "git rm --cached <file>..." to unstage)
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new file: file
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$> git commit -m 'added file'
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git-annex: git: createProcess: runInteractiveProcess: chdir: does not exist (No such file or directory)
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$> echo $?
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1
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$> git annex version
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git-annex version: 6.20180807+git230-gaa291acfe-1~ndall+1
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"""]]
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also happens with 6.20180807-1 but not with 6.20170101-1+deb9u2, so it is a regression
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[[!meta author=yoh]]
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