mostly finished with createDirectoryUnder conversion

Remaining things needing converted are in the assistant, and Annex.Ssh.

Every other remaining call to createDirectoryIfMissing True has been
audited and is not relevant. The ones in Build/ of course don't get
included in the program. Others included eg, Remote.Tahoe and
Config.Files which both write to dotfiles under the home directory.

Command/AddUrl.hs

@@ -20,6 +20,7 @@ import qualified Command.Add
 import Annex.Content
 import Annex.Ingest
 import Annex.CheckIgnore
+import Annex.Perms
 import Annex.UUID
 import Annex.YoutubeDl
 import Logs.Web
@@ -168,7 +169,7 @@ performRemote addunlockedmatcher r o uri file sz = ifAnnexed (toRawFilePath file
 downloadRemoteFile :: AddUnlockedMatcher -> Remote -> DownloadOptions -> URLString -> FilePath -> Maybe Integer -> Annex (Maybe Key)
 downloadRemoteFile addunlockedmatcher r o uri file sz = checkCanAdd file $ do
 	let urlkey = Backend.URL.fromUrl uri sz
-	liftIO $ createDirectoryIfMissing True (parentDir file)
+	createWorkTreeDirectory (parentDir file)
 	ifM (Annex.getState Annex.fast <||> pure (relaxedOption o))
 		( do
 			addWorkTree addunlockedmatcher (Remote.uuid r) loguri file urlkey Nothing
@@ -271,7 +272,7 @@ downloadWeb addunlockedmatcher o url urlinfo file =
 		)
 	normalfinish tmp = checkCanAdd file $ do
 		showDestinationFile file
-		liftIO $ createDirectoryIfMissing True (parentDir file)
+		createWorkTreeDirectory (parentDir file)
 		finishDownloadWith addunlockedmatcher tmp webUUID url file
 	tryyoutubedl tmp
 		-- Ask youtube-dl what filename it will download
@@ -357,7 +358,7 @@ downloadWith' downloader dummykey u url afile =
 		tmp <- fromRepo $ gitAnnexTmpObjectLocation dummykey
 		ok <- Transfer.notifyTransfer Transfer.Download url $
 			Transfer.download u dummykey afile Transfer.stdRetry $ \p -> do
-				liftIO $ createDirectoryIfMissing True (parentDir tmp)
+				createAnnexDirectory (parentDir tmp)
 				downloader tmp p
 		if ok
 			then return (Just tmp)
@@ -389,9 +390,9 @@ addWorkTree addunlockedmatcher u url file key mtmp = case mtmp of
 	Nothing -> go
 	Just tmp -> do
 		-- Move to final location for large file check.
-		pruneTmpWorkDirBefore tmp $ \_ -> liftIO $ do
-			createDirectoryIfMissing True (takeDirectory file)
-			renameFile tmp file
+		pruneTmpWorkDirBefore tmp $ \_ -> do
+			createWorkTreeDirectory (takeDirectory file)
+			liftIO $ renameFile tmp file
 		largematcher <- largeFilesMatcher
 		large <- checkFileMatcher largematcher file
 		if large
@@ -438,7 +439,7 @@ nodownloadWeb addunlockedmatcher o url urlinfo file
 nodownloadWeb' :: AddUnlockedMatcher -> URLString -> Key -> FilePath -> Annex (Maybe Key)
 nodownloadWeb' addunlockedmatcher url key file = checkCanAdd file $ do
 	showDestinationFile file
-	liftIO $ createDirectoryIfMissing True (parentDir file)
+	createWorkTreeDirectory (parentDir file)
 	addWorkTree addunlockedmatcher webUUID url file key Nothing
 	return (Just key)
 

Command/Fix.hs

@@ -94,7 +94,7 @@ fixSymlink file link = do
 		mtime <- catchMaybeIO $ modificationTimeHiRes
 			<$> getSymbolicLinkStatus file
 #endif
-		createDirectoryIfMissing True (parentDir file)
+		createWorkTreeDirectory (parentDir file)
 		removeFile file
 		createSymbolicLink link file
 #if ! defined(mingw32_HOST_OS)

Command/FromKey.hs

@@ -13,6 +13,7 @@ import Command
 import qualified Annex.Queue
 import Annex.Content
 import Annex.WorkTree
+import Annex.Perms
 import qualified Annex
 import qualified Backend.URL
 
@@ -85,7 +86,7 @@ perform key file = lookupFileNotHidden (toRawFilePath file) >>= \case
 		( hasothercontent
 		, do
 			link <- calcRepo $ gitAnnexLink file key
-			liftIO $ createDirectoryIfMissing True (parentDir file)
+			createWorkTreeDirectory (parentDir file)
 			liftIO $ createSymbolicLink link file
 			Annex.Queue.addCommand "add" [Param "--"] [file]
 			next $ return True

Command/Fsck.hs

@@ -219,7 +219,7 @@ fixLink key file = do
 	go want have
 		| want /= fromRawFilePath (fromInternalGitPath have) = do
 			showNote "fixing link"
-			liftIO $ createDirectoryIfMissing True (parentDir (fromRawFilePath file))
+			liftIO $ createWorkTreeDirectory (parentDir (fromRawFilePath file))
 			liftIO $ removeFile (fromRawFilePath file)
 			addAnnexLink want file
 		| otherwise = noop

Command/FuzzTest.hs

@@ -13,6 +13,7 @@ import Command
 import qualified Annex
 import qualified Git.Config
 import Config
+import Annex.Perms
 import Utility.ThreadScheduler
 import Utility.DiskFree
 import Git.Types (fromConfigKey)
@@ -172,10 +173,10 @@ instance Arbitrary FuzzAction where
 		]
 
 runFuzzAction :: FuzzAction -> Annex ()
-runFuzzAction (FuzzAdd (FuzzFile f)) = liftIO $ do
-	createDirectoryIfMissing True $ parentDir f
-	n <- getStdRandom random :: IO Int
-	writeFile f $ show n ++ "\n"
+runFuzzAction (FuzzAdd (FuzzFile f)) = do
+	createWorkTreeDirectory (parentDir f)
+	n <- liftIO (getStdRandom random :: IO Int)
+	liftIO $ writeFile f $ show n ++ "\n"
 runFuzzAction (FuzzDelete (FuzzFile f)) = liftIO $ nukeFile f
 runFuzzAction (FuzzMove (FuzzFile src) (FuzzFile dest)) = liftIO $
 	rename src dest

Command/Import.hs

@@ -25,6 +25,7 @@ import Annex.FileMatcher
 import Annex.Ingest
 import Annex.InodeSentinal
 import Annex.Import
+import Annex.Perms
 import Annex.RemoteTrackingBranch
 import Utility.InodeCache
 import Logs.Location
@@ -176,12 +177,12 @@ startLocal addunlockedmatcher largematcher mode (srcfile, destfile) =
 	importfilechecked ld k = do
 		-- Move or copy the src file to the dest file.
 		-- The dest file is what will be ingested.
-		liftIO $ createDirectoryIfMissing True (parentDir destfile)
+		createWorkTreeDirectory (parentDir destfile)
 		liftIO $ if mode == Duplicate || mode == SkipDuplicates
 			then void $ copyFileExternal CopyAllMetaData srcfile destfile
 			else moveFile srcfile destfile
 		-- Get the inode cache of the dest file. It should be
-		-- weakly the same as the origianlly locked down file's
+		-- weakly the same as the originally locked down file's
 		-- inode cache. (Since the file may have been copied,
 		-- its inodes may not be the same.)
 		newcache <- withTSDelta $ liftIO . genInodeCache destfile'

Database/Init.hs

@@ -10,7 +10,6 @@ module Database.Init where
 import Annex.Common
 import Annex.Perms
 import Utility.FileMode
-import Utility.Directory
 
 import Database.Persist.Sqlite
 import Control.Monad.IO.Class (liftIO)

Git/Repair.hs

@@ -245,8 +245,9 @@ explodePackedRefsFile r = do
 		nukeFile f
   where
 	makeref (sha, ref) = do
-		let dest = fromRawFilePath (localGitDir r) </> fromRef ref
-		createDirectoryIfMissing True (parentDir dest)
+		let gitd = fromRawFilePath (localGitDir r)
+		let dest = gitd </> fromRef ref
+		createDirectoryUnder gitd (parentDir dest)
 		unlessM (doesFileExist dest) $
 			writeFile dest (fromRef sha)
 

Remote/GCrypt.hs

@@ -49,6 +49,7 @@ import qualified Remote.Helper.Ssh as Ssh
 import Utility.Metered
 import Annex.UUID
 import Annex.Ssh
+import Annex.Perms
 import qualified Remote.Rsync
 import qualified Remote.Directory
 import Utility.Rsync
@@ -283,7 +284,7 @@ setupRepo gcryptid r
 	 - which is needed for direct rsync of objects to work.
 	 -}
 	rsyncsetup = Remote.Rsync.withRsyncScratchDir $ \tmp -> do
-		liftIO $ createDirectoryIfMissing True $ tmp </> objectDir
+		createAnnexDirectory (tmp </> objectDir)
 		dummycfg <- liftIO dummyRemoteGitConfig
 		(rsynctransport, rsyncurl, _) <- rsyncTransport r dummycfg
 		let tmpconfig = tmp </> "config"
@@ -368,7 +369,7 @@ store' repo r rsyncopts
 	| not $ Git.repoIsUrl repo = 
 		byteStorer $ \k b p -> guardUsable repo (return False) $ liftIO $ do
 			let tmpdir = Git.repoLocation repo </> "tmp" </> fromRawFilePath (keyFile k)
-			void $ tryIO $ createDirectoryIfMissing True tmpdir
+			void $ tryIO $ createDirectoryUnder (Git.repoLocation repo) tmpdir
 			let tmpf = tmpdir </> fromRawFilePath (keyFile k)
 			meteredWriteFile p tmpf b
 			let destdir = parentDir $ gCryptLocation repo k

Remote/Rsync.hs

@@ -27,6 +27,7 @@ import Config.Cost
 import Annex.Content
 import Annex.UUID
 import Annex.Ssh
+import Annex.Perms
 import Remote.Helper.Special
 import Remote.Helper.Messages
 import Remote.Helper.ExportImport
@@ -218,7 +219,7 @@ store o k src meterupdate = storeGeneric o meterupdate basedest populatedest
 storeGeneric :: RsyncOpts -> MeterUpdate -> FilePath -> (FilePath -> Annex Bool) -> Annex Bool
 storeGeneric o meterupdate basedest populatedest = withRsyncScratchDir $ \tmp -> do
 	let dest = tmp </> basedest
-	liftIO $ createDirectoryIfMissing True $ parentDir dest
+	createAnnexDirectory (parentDir dest)
 	ok <- populatedest dest
 	ps <- sendParams
 	if ok

Upgrade/V1.hs

@@ -17,6 +17,7 @@ import qualified Data.ByteString.Lazy as L
 import Annex.Common
 import Annex.Content
 import Annex.Link
+import Annex.Perms
 import Types.Key
 import Logs.Presence
 import qualified Annex.Queue
@@ -115,7 +116,7 @@ moveLocationLogs = do
 		dest <- fromRepo $ logFile2 k
 		dir <- fromRepo Upgrade.V2.gitStateDir
 		let f = dir </> l
-		liftIO $ createDirectoryIfMissing True (parentDir dest)
+		createWorkTreeDirectory (parentDir dest)
 		-- could just git mv, but this way deals with
 		-- log files that are not checked into git,
 		-- as well as merging with already upgraded