Added a comment: me too
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[[!comment format=mdwn
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username="anton"
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subject="me too"
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date="2015-05-07T09:50:09Z"
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content="""
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I get similar results on Windows, but I only use the command line. For some reason git-annex ignores the ssh-agent settings (SSH_AUTH_SOCK=...) and uses the wrong path for the ssh config dir -- /home/username/.ssh (that probably doesn't exist) -- instead of c:/Users/username/.ssh (or whatever it really is). Your issue is probably that ssh wrongly looks for known_hosts in /home/username/.ssh and asks whether you wan't to accept the unknown host key.
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SSH works when ran by git itself (like git clone/push/fetch), also for rsync, but seemingly not git-annex.
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"""]]
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