add test case & fix conflict resolution bug on Windows & FAT

Fix bug in automatic merge conflict resolution code when used
on a filesystem not supporting symlinks, which resulted in it losing
track of the symlink bit of annexed files.

This was the underlying bug that was causing another test to fail,
which got worked around in 1c997fd08c.
I've chosen to keep 2 separate test cases since the old test case only
detected the problem accidentially.

Test suite passes on FAT & in windows, as well as on proper unix systems.

This commit was sponsored by Ellis Whitehead.

Command/Sync.hs

@@ -392,14 +392,10 @@ resolveMerge' u
 			-- Our side is annexed, other side is not.
 			(Just keyUs, Nothing) -> do
 				ifM isDirect
-					-- Move newly added non-annexed object
-					-- out of direct mode merge directory.
 					( do
 						removeoldfile keyUs
 						makelink keyUs
-						d <- fromRepo gitAnnexMergeDir
-						liftIO $ rename (d </> file) file
-					-- cleaup tree after git merge
+						movefromdirectmerge file
 					, do
 						unstageoldfile
 						makelink keyUs
@@ -433,6 +429,31 @@ resolveMerge' u
 	getKey select = case select (LsFiles.unmergedSha u) of
 		Nothing -> return Nothing
 		Just sha -> catKey sha symLinkMode
+	
+	{- Move something out of the direct mode merge directory and into
+	 - the git work tree.
+	 -
+	 - On a filesystem not supporting symlinks, this is complicated
+	 - because a directory may contain annex links, but just
+	 - moving them into the work tree will not let git know they are
+	 - symlinks.
+	 -
+	 - Also, if the content of the file is available, make it available
+	 - in direct mode.
+	 -}
+	movefromdirectmerge item = do
+		d <- fromRepo gitAnnexMergeDir
+		liftIO $ rename (d </> item) item
+		mapM_ setuplink =<< liftIO (dirContentsRecursive item)
+	setuplink f = do
+		v <- getAnnexLinkTarget f
+		case v of
+			Nothing -> noop
+			Just target -> do
+				unlessM (coreSymlinks <$> Annex.getGitConfig) $
+					addAnnexLink target f
+				maybe noop (flip toDirect f) 
+					(fileKey (takeFileName target))
 
 {- git-merge moves conflicting files away to files
  - named something like f~HEAD or f~branch, but the

Test.hs

@@ -187,8 +187,8 @@ unitTests note getenv = testGroup ("Unit Tests " ++ note)
 	, check "sync" test_sync
 	, check "union merge regression" test_union_merge_regression
 	, check "conflict resolution" test_conflict_resolution_movein_bug
-	, check "sync push" test_sync_push
 	, check "conflict_resolution (mixed directory and file)" test_mixed_conflict_resolution
+	, check "conflict_resolution (mixed directory and file) 2" test_mixed_conflict_resolution2
 	, check "map" test_map
 	, check "uninit" test_uninit
 	, check "uninit (in git-annex branch)" test_uninit_inbranch
@@ -841,11 +841,19 @@ test_mixed_conflict_resolution env = do
 		any (variantprefix `isPrefixOf`) l
 			@? (what ++ " conflictor file missing in: " ++ show l )
 
-{- A windows-specific failure of mixed conflict resolution. -}
-test_sync_push :: TestEnv -> Assertion
-test_sync_push env = check >> check
+{- 
+ - During conflict resolution, one of the annexed files in git is
+ - accidentially converted from a symlink to a regular file.
+ - This only happens on crippled filesystems.
+ -
+ - This test case happens to detect the problem when it tries the next
+ - pass of conflict resolution, since it's unable to resolve a conflict
+ - between an annexed and non-annexed file.
+ -}
+test_mixed_conflict_resolution2 :: TestEnv -> Assertion
+test_mixed_conflict_resolution2 env = go >> go
   where
-	check = withtmpclonerepo env False $ \r1 ->
+	go = withtmpclonerepo env False $ \r1 ->
 		withtmpclonerepo env False $ \r2 -> do
 			indir env r1 $ do
 				writeFile conflictor "conflictor"

debian/changelog

@@ -13,6 +13,9 @@ git-annex (5.20140128) UNRELEASED; urgency=medium
     Closes: #737480
   * sync --content: Drop files from remotes that don't have them after
     getting them.
+  * sync: Fix bug in automatic merge conflict resolution code when used
+    on a filesystem not supporting symlinks, which resulted in it losing
+    track of the symlink bit of annexed files.
   * Added ways to configure rsync options to be used only when uploading
     or downloading from a remote. Useful to eg limit upload bandwidth.
   * Document in man page that sshcaching uses ssh ControlMaster.