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initial report on odd crash

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yarikoptic 2022-12-21 18:34:06 +00:00 committed by admin
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doc/bugs/standalone_needs_more_depends_-_libgcc-s1__63__.mdwn Normal file
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### Please describe the problem.
NB can't change the title since it is not about depends since libgcc-s1 is essential... so most likely some LD_LIBRARY_PATH manipulation is in place or smth like that.
[Testing of git-annex-remote-rclone on ubuntu-20.04 crashed](https://github.com/DanielDent/git-annex-remote-rclone/actions/runs/3750292044/jobs/6370225718) with
```
+ git-annex copy -J5 --quiet . --to GA-rclone-CI
libgcc_s.so.1 must be installed for pthread_cancel to work
/home/runner/work/git-annex-remote-rclone/git-annex-remote-rclone/tests/all-in-one.sh: line 124: 3066 Aborted (core dumped) git-annex copy -J5 --quiet . --to GA-rclone-CI
Error: Process completed with exit code 134.
```
installation of git annex
```
Run datalad-installer --sudo ok git-annex -m datalad/git-annex:release
2022-12-21T15:10:30+0000 [INFO ] datalad_installer Writing environment modifications to /tmp/dl-env-j8s29if7.sh
2022-12-21T15:10:30+0000 [INFO ] datalad_installer Installing git-annex via datalad/git-annex:release
2022-12-21T15:10:30+0000 [INFO ] datalad_installer Version: None
2022-12-21T15:10:30+0000 [INFO ] datalad_installer Downloading https://github.com/datalad/git-annex/releases/download/10.20221212/git-annex-standalone_10.20221212-1.ndall%2B1_amd64.deb
2022-12-21T15:10:33+0000 [INFO ] datalad_installer Running: sudo dpkg -i /tmp/tmpah14ch03/git-annex-standalone_10.20221212-1.ndall+1_amd64.deb
Selecting previously unselected package git-annex-standalone.
(Reading database ... 236921 files and directories currently installed.)
Preparing to unpack .../git-annex-standalone_10.20221212-1.ndall+1_amd64.deb ...
Unpacking git-annex-standalone (10.20221212-1~ndall+1) ...
Setting up git-annex-standalone (10.20221212-1~ndall+1) ...
Processing triggers for mailcap (3.70+nmu1ubuntu1) ...
Processing triggers for hicolor-icon-theme (0.17-2) ...
Processing triggers for man-db (2.10.2-1) ...
2022-12-21T15:10:35+0000 [INFO ] datalad_installer git-annex is now installed at /usr/bin/git-annex
```
or may be that is an issue with `rclone`? in this case it was
```
Run datalad-installer --sudo ok rclone=v1.59.2 -m downloads.rclone.org
2022-12-21T15:10:35+0000 [INFO ] datalad_installer Writing environment modifications to /tmp/dl-env-aon5z6_f.sh
2022-12-21T15:10:35+0000 [INFO ] datalad_installer Installing rclone from downloads.rclone.org
2022-12-21T15:10:35+0000 [INFO ] datalad_installer Version: v1.59.2
2022-12-21T15:10:35+0000 [INFO ] datalad_installer Bin dir: /usr/local/bin
2022-12-21T15:10:35+0000 [INFO ] datalad_installer Man dir: None
2022-12-21T15:10:35+0000 [INFO ] datalad_installer Downloading https://downloads.rclone.org/v1.59.2/rclone-v1.59.2-linux-amd64.zip
2022-12-21T15:10:38+0000 [INFO ] datalad_installer Moving /tmp/tmp75sde__c/rclone-v1.59.2-linux-amd64/rclone to /usr/local/bin/rclone
2022-12-21T15:10:38+0000 [INFO ] datalad_installer rclone is now installed at /usr/local/bin/rclone
```
I have tried to reproduce locally with exactly those installations of rclone and git-annex but not getting the same problem :-/
I have also ran with `--debug` and got
```
[2022-12-21 17:20:10.056928113] (Utility.Process) process [11603] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","-c","annex.debug=true","commit-tree","c95a5c849daca7183eefc28c360942104d01e900","--no-gpg-sign","-p","refs/heads/git-annex"]
[2022-12-21 17:20:10.060448661] (Utility.Process) process [11603] done ExitSuccess
[2022-12-21 17:20:10.060806165] (Utility.Process) process [11604] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","-c","annex.debug=true","update-ref","refs/heads/git-annex","248cef615747c4aba64fbb475b0a03c8d2a78b27"]
[2022-12-21 17:20:10.063957208] (Utility.Process) process [11604] done ExitSuccess
[2022-12-21 17:20:10.066005436] (Utility.Process) process [11127] done ExitSuccess
[2022-12-21 17:20:10.066266539] (Utility.Process) process [11114] done ExitSuccess
[2022-12-21 17:20:10.066702845] (Utility.Process) process [11126] done ExitSuccess
[2022-12-21 17:20:10.067107151] (Utility.Process) process [11125] done ExitSuccess
[2022-12-21 17:20:10.067357854] (Utility.Process) process [11599] done ExitSuccess
libgcc_s.so.1 must be installed for pthread_cancel to work
/home/runner/work/git-annex-remote-rclone/git-annex-remote-rclone/tests/all-in-one.sh: line 125: 11083 Aborted (core dumped) git-annex drop -J5 --debug .
Error: Process completed with exit code 134.
```
in https://github.com/DanielDent/git-annex-remote-rclone/actions/runs/3751417971/jobs/6372374929 .
Any ideas Joey?
[[!meta author=yoh]]
[[!tag projects/dandi]]