mirrors/git-annex
2
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions

Add bug report about SQLite error

Browse source
This commit is contained in:
sunny256 2017-01-16 10:15:36 +00:00 committed by admin
parent 4b6226bf31
commit 610846f2e6
1 changed files with 80 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

80
doc/bugs/Aborts_with_SQLite_error_when_dropping_contents.mdwn Normal file
View file

@ -0,0 +1,80 @@
### Please describe the problem.
Trying to drop the contents of 131 files in a subdirectory, but it dies
with an "sqlite worker thread crashed" error. The contents of one file
is deleted, and then it dies. The files in that directory are exactly 1G
(1000000000) bytes each.
There's no data loss here, it creates files in `.git/annex/journal/`
which is added to the git-annex branch after a git annex sync. "git
annex fsck --fast --quiet" is happy and finds no errors.
### What steps will reproduce the problem?
"git annex drop" with and without --force. Tried to copy one of the
files to another server with Debian 8.7, and it's successfully dropped
there. Same git-annex version.
### What version of git-annex are you using? On what operating system?
OS: Ubuntu 14.04.5 LTS
git-annex: 6.20161211-gc3ab3c668 (from
`git-annex-standalone-amd64.tar.gz` in the annex at
downloads.kitenet.net)
I have compiled the newest sqlite3 3.16.2 and placed it in
/usr/local/bin/, just mentioning it because it's some kind of SQLite
error. but executing the command with a PATH without /usr/local/bin
makes no difference.
### Please provide any additional information below.
# If you can, paste a complete transcript of the problem occurring here.
# If the problem is with the git-annex assistant, paste in .git/annex/daemon.log
$ git annex drop -d --force
[2017-01-16 08:58:39.947856861] read: git ["--git-dir=../../../../../../../.git","--work-tree=../../../../../../..","--literal-pathspecs","ls-files","--cached","-z","--"]
[2017-01-16 08:58:39.953150944] chat: git ["--git-dir=../../../../../../../.git","--work-tree=../../../../../../..","--literal-pathspecs","check-attr","-z","--stdin","annex.backend","annex.numcopies","annex.largefiles","--"]
[2017-01-16 08:58:39.953742873] read: git ["--version"]
[2017-01-16 08:58:39.959438053] process done ExitSuccess
[2017-01-16 08:58:39.959919735] read: git ["--git-dir=../../../../../../../.git","--work-tree=../../../../../../..","--literal-pathspecs","show-ref","git-annex"]
[2017-01-16 08:58:39.963707897] process done ExitSuccess
[2017-01-16 08:58:39.963882344] read: git ["--git-dir=../../../../../../../.git","--work-tree=../../../../../../..","--literal-pathspecs","show-ref","--hash","refs/heads/git-annex"]
[2017-01-16 08:58:39.967078602] process done ExitSuccess
[2017-01-16 08:58:39.969062554] chat: git ["--git-dir=../../../../../../../.git","--work-tree=../../../../../../..","--literal-pathspecs","cat-file","--batch"]
[2017-01-16 08:58:39.970168767] chat: git ["--git-dir=../../../../../../../.git","--work-tree=../../../../../../..","--literal-pathspecs","cat-file","--batch-check=%(objectname) %(objecttype) %(objectsize)"]
drop MyStream_3/MyStream_3.mp4.split_ag [2017-01-16 08:58:39.984359273] Dropping from here proof: Nothing
sqlite worker thread crashed: SQLite3 returned ErrorCan'tOpen while attempting to perform prepare "SELECT null from content limit 1": unable to open database file
ok
git-annex: thread blocked indefinitely in an MVar operation
$ git annex drop -d --force
[2017-01-16 08:58:58.890031175] read: git ["--git-dir=../../../../../../../.git","--work-tree=../../../../../../..","--literal-pathspecs","ls-files","--cached","-z","--"]
[2017-01-16 08:58:58.895047131] chat: git ["--git-dir=../../../../../../../.git","--work-tree=../../../../../../..","--literal-pathspecs","check-attr","-z","--stdin","annex.backend","annex.numcopies","annex.largefiles","--"]
[2017-01-16 08:58:58.895690334] read: git ["--version"]
[2017-01-16 08:58:58.901206493] process done ExitSuccess
[2017-01-16 08:58:58.901836453] read: git ["--git-dir=../../../../../../../.git","--work-tree=../../../../../../..","--literal-pathspecs","show-ref","git-annex"]
[2017-01-16 08:58:58.905632574] process done ExitSuccess
[2017-01-16 08:58:58.905793223] read: git ["--git-dir=../../../../../../../.git","--work-tree=../../../../../../..","--literal-pathspecs","show-ref","--hash","refs/heads/git-annex"]
[2017-01-16 08:58:58.909227509] process done ExitSuccess
[2017-01-16 08:58:58.910902084] chat: git ["--git-dir=../../../../../../../.git","--work-tree=../../../../../../..","--literal-pathspecs","cat-file","--batch"]
[2017-01-16 08:58:58.912164764] chat: git ["--git-dir=../../../../../../../.git","--work-tree=../../../../../../..","--literal-pathspecs","cat-file","--batch-check=%(objectname) %(objecttype) %(objectsize)"]
drop MyStream_3/MyStream_3.mp4.split_ah [2017-01-16 08:58:58.927477693] Dropping from here proof: Nothing
sqlite worker thread crashed: SQLite3 returned ErrorCan'tOpen while attempting to perform prepare "SELECT null from content limit 1": unable to open database file
ok
git-annex: thread blocked indefinitely in an MVar operation
$
# End of transcript or log.
### Have you had any luck using git-annex before? (Sometimes we get tired of reading bug reports all day and a lil' positive end note does wonders)
Indeed. All my stuff (around 3.5 terabytes) is stored in git-annex with
at least three copies of each file on different disks and locations,
spread over various hard disks, memory sticks, servers and you name it.
Unused disk space is a waste, so I fill everything up to the brim with
extra copies.
In other words, Git-Annex and I are very happy together, and I'd like to
marry it. And because you are the father, I hereby respectfully ask for
your blessing.