Merge branch 'master' of ssh://git-annex.branchable.com
This commit is contained in:
Joey Hess
commit
59adf4309c
5 changed files with 155 additions and 0 deletions
40
doc/bugs/FTBFS_on_OSX__47__Windows.mdwn
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40
doc/bugs/FTBFS_on_OSX__47__Windows.mdwn
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### Please describe the problem.
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For the past few days consistently
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```
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496 T Mar 06 GitHub Actions *-4.4* (4.8K/0) datalad/git-annex daily summary: 14 PASSED, 3 FAILED, 5 INCOMPLETE
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935 T Mar 05 GitHub Actions *-4.3* (4.8K/0) datalad/git-annex daily summary: 14 PASSED, 3 FAILED, 5 INCOMPLETE
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1471 N T Mar 04 GitHub Actions *-1.9* (4.8K/0) datalad/git-annex daily summary: 15 PASSED, 2 FAILED, 5 INCOMPLETE
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1704 T Mar 03 GitHub Actions *-0.9* (4.8K/0) datalad/git-annex daily summary: 15 PASSED, 2 FAILED, 5 INCOMPLETE
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2619 T Mar 01 GitHub Actions *-3.1* (6.5K/0) datalad/git-annex daily summary: 30 PASSED
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2935 O T Feb 28 GitHub Actions *-3.8* (6.5K/0) datalad/git-annex daily summary: 30 PASSED
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```
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[sample build on OSX](https://github.com/datalad/git-annex/actions/runs/4320138939/jobs/7540059666) says
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```
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Utility/RawFilePath.hs:40:1: error:
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Could not load module ‘System.Posix.Files.ByteString’
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It is a member of the hidden package ‘unix-2.7.2.2’.
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You can run ‘:set -package unix’ to expose it.
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(Note: this unloads all the modules in the current scope.)
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Use -v (or `:set -v` in ghci) to see a list of the files searched for.
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40 | import System.Posix.Files.ByteString
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| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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Utility/RawFilePath.hs:41:1: error:
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Could not load module ‘System.Posix.Directory.ByteString’
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It is a member of the hidden package ‘unix-2.7.2.2’.
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You can run ‘:set -package unix’ to expose it.
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(Note: this unloads all the modules in the current scope.)
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Use -v (or `:set -v` in ghci) to see a list of the files searched for.
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41 | import qualified System.Posix.Directory.ByteString as D
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| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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```
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[[!meta author=yoh]]
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[[!tag projects/datalad]]
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@ -0,0 +1,19 @@
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[[!comment format=mdwn
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username="hurlebouc"
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avatar="http://cdn.libravatar.org/avatar/bda734a6d937c1fe0c9778a6eaefffbc"
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subject="comment 5"
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date="2023-03-08T15:11:26Z"
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content="""
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Hi, and thank you for keeping anwsering my question!
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I do succeed in reading this file. And here is the content:
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sqlite> .dump
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PRAGMA foreign_keys=OFF;
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BEGIN TRANSACTION;
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CREATE TABLE IF NOT EXISTS \"associated\"(\"id\" INTEGER PRIMARY KEY,\"key\" BLOB NOT NULL,\"file\" BLOB NOT NULL,CONSTRAINT \"key_file_index\" UNIQUE (\"key\",\"file\"),CONSTRAINT \"file_key_index\" UNIQUE (\"file\",\"key\"));
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CREATE TABLE IF NOT EXISTS \"content\"(\"id\" INTEGER PRIMARY KEY,\"key\" BLOB NOT NULL,\"inodecache\" VARCHAR NOT NULL,\"filesize\" VARCHAR NOT NULL,\"mtime\" INTEGER NOT NULL,CONSTRAINT \"key_inode_cache_index\" UNIQUE (\"key\",\"inodecache\"),CONSTRAINT \"inode_cache_key_index\" UNIQUE (\"inodecache\",\"key\"));
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COMMIT;
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sqlite>
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"""]]
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[[!comment format=mdwn
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username="hurlebouc"
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avatar="http://cdn.libravatar.org/avatar/bda734a6d937c1fe0c9778a6eaefffbc"
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subject="comment 6"
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date="2023-03-08T15:16:28Z"
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content="""
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Problem identified!
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The directory `repo` was actually containing \"é\" char. When I remove this char, problem disapeared.
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"""]]
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53
doc/bugs/copy_--from_--to_does_not_adjust_avail_info.mdwn
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53
doc/bugs/copy_--from_--to_does_not_adjust_avail_info.mdwn
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### Please describe the problem.
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```
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(dandisets) dandi@drogon:/mnt/backup/dandi/dandizarrs/27964c5b-6ccd-4e23-a67d-a535282bab34$ git annex whereis 0/0/0/13/2/12 | head
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whereis 0/0/0/13/2/12 (1 copy)
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00000000-0000-0000-0000-000000000001 -- web
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web: https://api.dandiarchive.org/api/zarr/27964c5b-6ccd-4e23-a67d-a535282bab34.zarr/0/0/0/1/0/0
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web: https://api.dandiarchive.org/api/zarr/27964c5b-6ccd-4e23-a67d-a535282bab34.zarr/0/0/0/1/1/0
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web: https://api.dandiarchive.org/api/zarr/27964c5b-6ccd-4e23-a67d-a535282bab34.zarr/0/0/0/1/10/0
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web: https://api.dandiarchive.org/api/zarr/27964c5b-6ccd-4e23-a67d-a535282bab34.zarr/0/0/0/1/11/0
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web: https://api.dandiarchive.org/api/zarr/27964c5b-6ccd-4e23-a67d-a535282bab34.zarr/0/0/0/1/12/0
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web: https://api.dandiarchive.org/api/zarr/27964c5b-6ccd-4e23-a67d-a535282bab34.zarr/0/0/0/1/13/0
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web: https://api.dandiarchive.org/api/zarr/27964c5b-6ccd-4e23-a67d-a535282bab34.zarr/0/0/0/1/14/0
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(dandisets) dandi@drogon:/mnt/backup/dandi/dandizarrs/27964c5b-6ccd-4e23-a67d-a535282bab34$ time git annex copy --from web --to dandi-dandizarrs-dropbox 0/0/0/13/2/12
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copy 0/0/0/13/2/12 (from web...) (to dandi-dandizarrs-dropbox...) ok
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real 0m0.366s
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user 0m0.104s
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sys 0m0.042s
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(dandisets) dandi@drogon:/mnt/backup/dandi/dandizarrs/27964c5b-6ccd-4e23-a67d-a535282bab34$ git annex whereis 0/0/0/13/2/12 | head
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whereis 0/0/0/13/2/12 (1 copy)
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00000000-0000-0000-0000-000000000001 -- web
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web: https://api.dandiarchive.org/api/zarr/27964c5b-6ccd-4e23-a67d-a535282bab34.zarr/0/0/0/1/0/0
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web: https://api.dandiarchive.org/api/zarr/27964c5b-6ccd-4e23-a67d-a535282bab34.zarr/0/0/0/1/1/0
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web: https://api.dandiarchive.org/api/zarr/27964c5b-6ccd-4e23-a67d-a535282bab34.zarr/0/0/0/1/10/0
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web: https://api.dandiarchive.org/api/zarr/27964c5b-6ccd-4e23-a67d-a535282bab34.zarr/0/0/0/1/11/0
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web: https://api.dandiarchive.org/api/zarr/27964c5b-6ccd-4e23-a67d-a535282bab34.zarr/0/0/0/1/12/0
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web: https://api.dandiarchive.org/api/zarr/27964c5b-6ccd-4e23-a67d-a535282bab34.zarr/0/0/0/1/13/0
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web: https://api.dandiarchive.org/api/zarr/27964c5b-6ccd-4e23-a67d-a535282bab34.zarr/0/0/0/1/14/0
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(dandisets) dandi@drogon:/mnt/backup/dandi/dandizarrs/27964c5b-6ccd-4e23-a67d-a535282bab34$ git annex list 0/0/0/13/2/12
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here
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|github
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||dandiapi
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|||web
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||||bittorrent
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|||||dandi-dandizarrs-dropbox (untrusted)
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__XX__ 0/0/0/13/2/12
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```
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I would expect `copy` to make a record locally that now the content is also on destination remote, so 2nd invocation of `copy --from ... --to ... --auto` does nothing.
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### What version of git-annex are you using? On what operating system?
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```
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10.20230227-gb02b9cc Debian GNU/Linux
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```
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[[!meta author=yoh]]
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[[!tag projects/dandi]]
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### Please describe the problem.
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ref: [https://github.com/datalad/datalad/issues/7173#issuecomment-1314968568](https://github.com/datalad/datalad/issues/7173#issuecomment-1314968568)
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```
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❯ mkdir "/tmp/new
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dquote> line"
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❯ cd "/tmp/new
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line"
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❯ git init
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Initialized empty Git repository in /tmp/new
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line/.git/
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❯ git annex init
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init ok
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fatal: Cannot open '/tmp/new': No such file or directory
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fatal: Cannot open '/tmp/new': No such file or directory
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fatal: Cannot open '/tmp/new': No such file or directory
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fatal: Cannot open '/tmp/new': No such file or directory
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fatal: Cannot open '/tmp/new': No such file or directory
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fatal: Cannot open '/tmp/new': No such file or directory
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fatal: Cannot open '/tmp/new': No such file or directory
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fatal: Cannot open '/tmp/new': No such file or directory
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fatal: Cannot open '/tmp/new': No such file or directory
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fatal: Cannot open '/tmp/new': No such file or directory
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fatal: Cannot open '/tmp/new': No such file or directory
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git-annex: fd:19: Data.ByteString.hGetLine: end of file
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❯ git annex version
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git-annex version: 10.20230214+git26-g8f2829e646-1~ndall+1
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```
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as `git` doesn't mind, and now annex batched commands support `-z` already for filenames with newlines in them, I think git-annex should tolerate repository folders with newlines in them too.
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