add a note about direct mode
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@ -11,3 +11,9 @@ Notice that, since annexed files are represented by symlinks,
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the symlink will break when the file is moved into a subdirectory.
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But, git-annex will fix this up for you when you commit --
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it has a pre-commit hook that watches for and corrects broken symlinks.
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## Direct mode
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Note that these git commands only work when git-annex is using indirect mode. Repositories created by the [[assistant]] are in [[direct_mode]]. Running 'git mv' in direct mode will give you an error:
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fatal: This operation must be run in a work tree
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