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https://me.yahoo.com/a/EbvxpTI_xP9Aod7Mg4cwGhgjrCrdM5s-#7c0f4 2016-07-14 14:18:31 +00:00 • committed by admin
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doc/bugs/drop_blows_on_lustre__58___SQLite3_returned_ErrorIO.mdwn Normal file
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[[!format sh """
$> git clone http://data.pymvpa.org/datasets/tutorial_data/.git tutorial_data-2
Cloning into 'tutorial_data-2'...
Checking connectivity... done.
cd
#35 !280 [0].....................................:Thu Jul 14 10:16:49:.
anthill:/home/ironfs/scratch/yarik
$> cd tutorial_data-2
total 36
4 freesurfer/ 4 hyperalignment_tutorial_data.hdf5.gz@ 20 suma_surfaces/
4 haxby2001/ 4 results/
(git)/home/ironfs/scratch/yarik/tutorial_data-2:[master]
#36 !281 [0].....................................:Thu Jul 14 10:16:50:.
anthill:/home/ironfs/scratch/yarik/tutorial_data-2
$> git annex get hyperalignment_tutorial_data.hdf5.gz
Detected a filesystem without POSIX fcntl lock support.
Enabling annex.pidlock.
(merging origin/git-annex into git-annex...)
(recording state in git...)
/home/ironfs/scratch 100%[===================>] 15.04M 68.9MB/s in 0.2s
(checksum...) ok
(recording state in git...)
(git)/home/ironfs/scratch/yarik/tutorial_data-2:[master]
#37 !282 [0].....................................:Thu Jul 14 10:16:54:.
anthill:/home/ironfs/scratch/yarik/tutorial_data-2
$> git annex drop hyperalignment_tutorial_data.hdf5.gz
drop hyperalignment_tutorial_data.hdf5.gz (checking origin...) git-annex: SQLite3 returned ErrorIO while attempting to perform prepare "PRAGMA journal_mode=WAL;": disk I/O error
(git)/home/ironfs/scratch/yarik/tutorial_data-2:[master]
$> git annex fsck
fsck freesurfer/anat_nii.nii sqlite worker thread crashed: SQLite3 returned ErrorIO while attempting to perform prepare "SELECT null from content limit 1": disk I/O error
git-annex: sqlite query crashed
$> git annex version
git-annex version: 6.20160613-g35dbe35
build flags: Assistant Webapp Pairing Testsuite S3(multipartupload)(storageclasses) WebDAV Inotify DBus DesktopNotify XMPP ConcurrentOutput TorrentParser MagicMime Feeds Quvi
key/value backends: SHA256E SHA256 SHA512E SHA512 SHA224E SHA224 SHA384E SHA384 SHA3_256E SHA3_256 SHA3_512E SHA3_512 SHA3_224E SHA3_224 SHA3_384E SHA3_384 SKEIN256E SKEIN256 SKEIN512E SKEIN512 SHA1E SHA1 MD5E MD5 WORM URL
remote types: git gcrypt S3 bup directory rsync web bittorrent webdav tahoe glacier ddar hook external
local repository version: 5
supported repository versions: 5 6
upgrade supported from repository versions: 0 1 2 3 4 5
operating system: linux x86_64
(git)/home/ironfs/scratch/yarik/tutorial_data:[master]
"""]]
[[!meta author=yoh]]