Added a comment
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[[!comment format=mdwn
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username="http://joeyh.name/"
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ip="209.250.56.2"
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subject="comment 1"
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date="2014-07-10T19:50:38Z"
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content="""
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The files that you describe are normally tucked away on the git-annex branch of the git repository, where they're neither seen nor heard.
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The most likely cause of your problem would be if you have done a \"git checkout git-annex\" ... or worse, a \"git merge git-annex\".
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So, check what branch you have checked out, and if it's the git-annex branch, you'll want to change back to master. If you've got master checked out and have these files, you can use `git log --stat` and see if there's a commit that added a bunch of these files to your master branch. Then you can revert that commit.
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"""]]
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