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[[!comment format=mdwn
username="http://joeyh.name/"
ip="4.152.108.220"
subject="comment 3"
date="2013-09-25T17:03:29Z"
content="""
Interesting experiment.
I don't know why you don't want to let git-annex sync its data to $gitdir.
The symlinks could be occuring because of a bug in direct mode. (I have fixed many past bugs that caused that.) But just as likely it's because ikiwiki will run `git pull` in the srcdir.
I think it would make more sense to use the underlay plugin and keep your annexed repository in a separate underlay. This would guarantee ikiwiki doesn't run git commands in there, and would ensure that nothing done with the web interface could mess with the annex.
"""]]