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[[!comment format=mdwn
username="kyle"
avatar="http://cdn.libravatar.org/avatar/7d6e85cde1422ad60607c87fa87c63f3"
subject="comment 4"
date="2020-08-20T20:34:23Z"
content="""
Git tracks the symlink. After your first commit, here's what is
tracked for protein/milk:
```
$ git show HEAD:protein/milk
../.git/annex/objects/M4/kf/SHA256E-s5--ccfd6ff816d055a64ff4421370d71bc5cdb2a1e0a8afa62b69bb52dd0781f00c/SHA256E-s5--ccfd6ff816d055a64ff4421370d71bc5cdb2a1e0a8afa62b69bb52dd0781f00c
```
And after your second commit:
```
$ git show HEAD:amino-acids/milk
../.git/annex/objects/M4/kf/SHA256E-s5--ccfd6ff816d055a64ff4421370d71bc5cdb2a1e0a8afa62b69bb52dd0781f00c/SHA256E-s5--ccfd6ff816d055a64ff4421370d71bc5cdb2a1e0a8afa62b69bb52dd0781f00c
```
Note that it's exactly the same content, and Git will (by default)
present it as a rename.
In your final commit, the link that Git tracks changes:
```
$ git show HEAD:atoms
.git/annex/objects/M4/kf/SHA256E-s5--ccfd6ff816d055a64ff4421370d71bc5cdb2a1e0a8afa62b69bb52dd0781f00c/SHA256E-s5--ccfd6ff816d055a64ff4421370d71bc5cdb2a1e0a8afa62b69bb52dd0781f00c
```
Notice that the leading part of the link changed, corresponding to the
movement out of the subdirectory.
"""]]