followup
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[[!comment format=mdwn
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username="joey"
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subject="""comment 4"""
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date="2018-09-11T18:33:22Z"
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content="""
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Reproduced in a debian stable chroot with current git-annex in it.
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root@darkstar:/tmp# mkdir repo; cd repo; git init; git annex init; git annex upgrade; git config filter.annex.clean 'bash -c "set | grep GIT_ >&2; pwd >&2; git-annex smudge --clean %f"' ; mkdir -p subdir; cd subdir; touch file; git add file
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...
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GIT_DIR=.git
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GIT_PREFIX=subdir/
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/tmp/repo
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git-annex: git: createProcess: runInteractiveProcess: chdir: does not exist (No such file or directory)
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Verifies my theory.
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"""]]
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