Added GIT_ANNEX_VECTOR_CLOCK environment variable
Can be used to override the default timestamps used in log files in the git-annex branch. This is a dangerous environment variable; use with caution. Note that this only affects writing to the logs on the git-annex branch. It is not used for metadata in git commits (other env vars can be set for that). There are many other places where timestamps are still used, that don't get committed to git, but do touch disk. Including regular timestamps of files, and timestamps embedded in some files in .git/annex/, including the last fsck timestamp and timestamps in transfer log files. A good way to find such things in git-annex is to get for getPOSIXTime and getCurrentTime, although some of the results are of course false positives that never hit disk (unless git-annex gets swapped out..) So this commit does NOT necessarily make git-annex comply with some HIPPA privacy regulations; it's up to the user to determine if they can use it in a way compliant with such regulations. Benchmarking: It takes 0.00114 milliseconds to call getEnv "GIT_ANNEX_VECTOR_CLOCK" when that env var is not set. So, 100 thousand log files can be written with an added overhead of only 0.114 seconds. That should be by far swamped by the actual overhead of writing the log files and making the commit containing them. This commit was supported by the NSF-funded DataLad project.
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28 changed files with 185 additions and 138 deletions
16
Logs/UUID.hs
16
Logs/UUID.hs
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@ -21,23 +21,23 @@ module Logs.UUID (
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uuidMapLoad
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) where
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import qualified Data.Map as M
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import Data.Time.Clock.POSIX
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import Types.UUID
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import Annex.Common
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import Annex.VectorClock
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import qualified Annex
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import qualified Annex.Branch
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import Logs
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import Logs.UUIDBased
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import qualified Annex.UUID
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import qualified Data.Map as M
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{- Records a description for a uuid in the log. -}
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describeUUID :: UUID -> String -> Annex ()
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describeUUID uuid desc = do
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ts <- liftIO getPOSIXTime
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c <- liftIO currentVectorClock
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Annex.Branch.change uuidLog $
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showLog id . changeLog ts uuid desc . fixBadUUID . parseLog Just
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showLog id . changeLog c uuid desc . fixBadUUID . parseLog Just
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{- Temporarily here to fix badly formatted uuid logs generated by
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- versions 3.20111105 and 3.20111025.
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@ -52,7 +52,7 @@ fixBadUUID :: Log String -> Log String
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fixBadUUID = M.fromList . map fixup . M.toList
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where
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fixup (k, v)
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| isbad = (fixeduuid, LogEntry (Date $ newertime v) fixedvalue)
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| isbad = (fixeduuid, LogEntry (newertime v) fixedvalue)
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| otherwise = (k, v)
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where
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kuuid = fromUUID k
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@ -63,8 +63,8 @@ fixBadUUID = M.fromList . map fixup . M.toList
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fixedvalue = unwords $ kuuid: Prelude.init ws
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-- For the fixed line to take precidence, it should be
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-- slightly newer, but only slightly.
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newertime (LogEntry (Date d) _) = d + minimumPOSIXTimeSlice
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newertime (LogEntry Unknown _) = minimumPOSIXTimeSlice
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newertime (LogEntry (VectorClock c) _) = VectorClock (c + minimumPOSIXTimeSlice)
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newertime (LogEntry Unknown _) = VectorClock minimumPOSIXTimeSlice
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minimumPOSIXTimeSlice = 0.000001
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isuuid s = length s == 36 && length (splitc '-' s) == 5
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