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"git annex upgrade" has lost track of some of my files. Most of them have "&" characters. The others contain "%" characters (I haven't tried the testcase below with "%" however).
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Testcase:
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# (With git annex v2)
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mkdir ~/testannex1
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cd ~/testannex1
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git init
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git annex init "testannex1"
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touch '02 - Afternoons & Coffeespoons.mp3'
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touch 'no ampersand.mp3'
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git annex add '02 - Afternoons & Coffeespoons.mp3'
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git annex add 'no ampersand.mp3'
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git commit -m added
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git annex whereis '02 - Afternoons & Coffeespoons.mp3'
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git annex whereis 'no ampersand.mp3'
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# (Upgrade git-annex binary to v3 and then...)
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git annex upgrade
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git annex whereis '02 - Afternoons & Coffeespoons.mp3'
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git annex whereis 'no ampersand.mp3'
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This produces:
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12:38:40 ~/testannex1 (master)$ git annex whereis '02 - Afternoons & Coffeespoons.mp3'
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whereis 02 - Afternoons & Coffeespoons.mp3 (0 copies)
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failed
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git-annex: 1 failed
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12:38:40 ~/testannex1 (master)$ git annex whereis 'no ampersand.mp3'
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whereis no ampersand.mp3 (1 copy)
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a7b680fc-a8d0-11e0-b0fe-4f94e86d1fb7 -- testannex1 <-- here
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ok
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