move bug report out of forum
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Joey Hess
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doc/bugs/Weird_directories_appearing.mdwn
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73
doc/bugs/Weird_directories_appearing.mdwn
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Hello!
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Can someone explain this behavior to me? System is ArchLinux with the newest prebuilt tarballs as of Jan 12th.
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~ % mkdir GA1
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~ % cd GA1
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~/GA1 % git init
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Initialized empty Git repository in /home/florian/GA1/.git/
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~/GA1 (git)-[master] % git annex init
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init ok
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(Recording state in git...)
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~/GA1 (git)-[master] % echo "GA1" > testfile
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~/GA1 (git)-[master] % git annex add .
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add testfile ok
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(Recording state in git...)
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~/GA1 (git)-[master] % git annex sync
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commit ok
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~/GA1 (git)-[master] % cd ..
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~ % git clone GA1 GA2
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Cloning into 'GA2'...
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done.
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~ % cd GA2
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~/GA2 (git)-[master] % git annex init
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init ok
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(Recording state in git...)
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~/GA2 (git)-[master] % git annex get .
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get testfile (merging origin/git-annex into git-annex...)
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(Recording state in git...)
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(from origin...) ok
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(Recording state in git...)
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~/GA2 (git)-[master] % git annex unlock testfile
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unlock testfile (copying...) ok
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~/GA2 (git)-[master] % echo "GA2" > testfile
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commit ok
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pull origin
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ok
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push origin
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Counting objects: 27, done.
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Delta compression using up to 4 threads.
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Compressing objects: 100% (16/16), done.
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Writing objects: 100% (20/20), 1.88 KiB | 0 bytes/s, done.
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Total 20 (delta 2), reused 0 (delta 0)
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To /home/florian/GA1
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f0654aa..8d0bdf9 master -> synced/master
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* [new branch] git-annex -> synced/git-annex
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ok
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~/GA2 (git)-[master] % cd ../GA1
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~/GA1 (git)-[master] % git annex sync
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(merging synced/git-annex into git-annex...)
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commit ok
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merge synced/master
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Updating f0654aa..8d0bdf9
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Fast-forward
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e6a/e57/SHA256E-s4--241dca52164d30bee7a0be8c097f02e382acff765a9d4136718a37abd437a57c.log | 1 +
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testfile | 2 +-
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2 files changed, 2 insertions(+), 1 deletion(-)
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create mode 100644 e6a/e57/SHA256E-s4--241dca52164d30bee7a0be8c097f02e382acff765a9d4136718a37abd437a57c.log
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ok
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~/GA1 (git)-[master] % ll
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total 4
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drwxr-x--- 1 florian florian 6 Jan 12 13:59 e6a/
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lrwxrwxrwx 1 florian florian 178 Jan 12 13:59 testfile -> .git/annex/objects/V6/ZM/SHA256E-s4--241dca52164d30bee7a0be8c097f02e382acff765a9d4136718a37abd437a57c/SHA256E-s4--241dca52164d30bee7a0be8c097f02e382acff765a9d4136718a37abd437a57c
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~/GA1 (git)-[master] % cat e6a/e57/SHA256E-s4--241dca52164d30bee7a0be8c097f02e382acff765a9d4136718a37abd437a57c.log
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1389531554.951523s 1 dedf9799-0131-4773-8939-8f76294fa8e9
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Where does the e6a directory comes from? I don't suspect a bug there, but in my conception of git-annex.
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Thanks!
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Florian
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[[!comment format=mdwn
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username="http://joeyh.name/"
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ip="209.250.56.43"
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subject="comment 1"
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date="2014-01-13T18:57:48Z"
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content="""
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The log file is supposed to be stored by git-annex in the git-annex branch of the git repository. I don't know how it could end up being committed to the master branch instead.
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Can you run these same commands again and reproduce the problem?
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"""]]
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[[!comment format=mdwn
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username="https://www.google.com/accounts/o8/id?id=AItOawnsuhFUIfWNT-Q-C02FDaSQqceFDge5M9w"
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nickname="Florian"
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subject="comment 2"
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date="2014-01-14T12:12:52Z"
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content="""
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Yes, I can always reproduce it with running \"sh test_ga.sh\" with test_ga.sh being:
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set -x
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mkdir GA1
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cd GA1
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git init
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git annex init \"GA1\"
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echo \"GA1\" > testfile
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git annex add .
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git annex sync
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cd ..
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git clone GA1 GA2
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cd GA2
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git annex init \"GA2\"
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git annex get .
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cat testfile
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git annex unlock testfile
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echo \"GA2\" > testfile
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git annex sync
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cd ../GA1
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git annex sync
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cd ..
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which gives:
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florian@horus ~/test % ll GA1
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insgesamt 4
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drwxr-x--- 1 florian florian 6 14. Jan 13:07 e6a/
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lrwxrwxrwx 1 florian florian 178 14. Jan 13:07 testfile -> .git/annex/objects/V6/ZM/SHA256E-s4--241dca52164d30bee7a0be8c097f02e382acff765a9d4136718a37abd437a57c/SHA256E-s4--241dca52164d30bee7a0be8c097f02e382acff765a9d4136718a37abd437a57c
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with testfile being a dead link. Complete output of the script is at http://pastebin.com/VktWAp2V
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I would be glad to help furthermore.
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"""]]
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[[!comment format=mdwn
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username="http://joeyh.name/"
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ip="209.250.56.43"
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subject="comment 3"
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date="2014-01-14T18:55:11Z"
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content="""
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This script does not produce the problem for me. How did you install git-annex from the tarball?
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"""]]
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[[!comment format=mdwn
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username="http://joeyh.name/"
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ip="209.250.56.43"
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subject="comment 4"
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date="2014-01-14T19:00:33Z"
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content="""
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Actually, I was able to reproduce this using the standalone tarball and runshell.
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"""]]
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[[!comment format=mdwn
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username="http://joeyh.name/"
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ip="209.250.56.43"
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subject="comment 5"
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date="2014-01-14T19:14:35Z"
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content="""
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Analysis: pre-commit hook is run with `GIT_INDEX_FILE=.git/index.lock`; this seems to be causing git-annex branch commits to land in that index file instead of where they are supposed to go. Also, commits of the files in the work tree also end up adding the symlinks to the git-annex branch when this happens. Apparantly because again it's using the wrong index file when committing to the git-annex branch.
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So, an easy workaround (disable pre-commit hook or make it `unset GIT_INDEX_FILE`, but I need to dig into why this env var is messing with git-annex like this.. I thought git-annex set the env var itself!
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"""]]
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[[!comment format=mdwn
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username="http://joeyh.name/"
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ip="209.250.56.43"
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subject="comment 6"
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date="2014-01-14T19:16:15Z"
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content="""
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Problem is that git-annex prepends `GIT_INDEX_FILE` to the environment; it does not overwrite it. So environment ends up with 2 copies of the var, and which will be used is undefined.
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"""]]
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[[!comment format=mdwn
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username="http://joeyh.name/"
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ip="209.250.56.43"
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subject="comment 7"
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date="2014-01-14T19:33:28Z"
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content="""
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I have fixed this in git. I will be moving this thread from the forum to the bug report tracker.
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"""]]
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