scanAnnexedFiles in smudge --update
This makes git checkout and git merge hooks do the work to catch up with changes that they made to the tree. Rather than doing it at some later point when the user is not thinking about that past operation. Sponsored-by: Dartmouth College's Datalad project
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[[!comment format=mdwn
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username="joey"
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subject="""comment 1"""
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date="2021-06-08T15:21:02Z"
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content="""
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Made `git-annex smudge --update` run the scan, and so the post-checkout or
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post-merge hook will call it.
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That avoids the scenario shown above. But adding a lot of files to the
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index can still cause a later pause for reconcileStaged without indication
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what it's doing.
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"""]]
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