annex.thin

Decided it's too scary to make v6 unlocked files have 1 copy by default,
but that should be available to those who need it. This is consistent with
git-annex not dropping unused content without --force, etc.

* Added annex.thin setting, which makes unlocked files in v6 repositories
  be hard linked to their content, instead of a copy. This saves disk
  space but means any modification of an unlocked file will lose the local
  (and possibly only) copy of the old version.
* Enable annex.thin by default on upgrade from direct mode to v6, since
  direct mode made the same tradeoff.
* fix: Adjusts unlocked files as configured by annex.thin.

Annex/Content.hs

@@ -25,8 +25,8 @@ module Annex.Content (
 	checkDiskSpace,
 	moveAnnex,
 	populatePointerFile,
-	linkAnnex,
-	linkAnnex',
+	linkToAnnex,
+	linkFromAnnex,
 	LinkAnnexResult(..),
 	unlinkAnnex,
 	checkedCopyFile,
@@ -469,11 +469,10 @@ moveAnnex key src = withObjectLoc key storeobject storedirect
 	storeobject dest = ifM (liftIO $ doesFileExist dest)
 		( alreadyhave
 		, modifyContent dest $ do
+			freezeContent src
 			liftIO $ moveFile src dest
 			fs <- Database.Keys.getAssociatedFiles key
-			if null fs
-				then freezeContent dest
-				else do
+			unless (null fs) $ do
 				mapM_ (populatePointerFile key dest) fs
 				Database.Keys.storeInodeCaches key (dest:fs)
 		)
@@ -510,38 +509,60 @@ populatePointerFile k obj f = go =<< isPointerFile f
   where
 	go (Just k') | k == k' = do
 		liftIO $ nukeFile f
-		unlessM (linkAnnex'' k obj f) $
-			liftIO $ writeFile f (formatPointer k)
+		ifM (linkOrCopy k obj f)
+			( thawContent f
+			, liftIO $ writeFile f (formatPointer k)
+			)
 	go _ = return ()
 
-{- Hard links a file into .git/annex/objects/, falling back to a copy
- - if necessary. Does nothing if the object file already exists.
- -
- - Does not lock down the hard linked object, so that the user can modify
- - the source file. So, adding an object to the annex this way can
- - prevent losing the content if the source file is deleted, but does not
- - guard against modifications.
- -}
-linkAnnex :: Key -> FilePath -> Maybe InodeCache -> Annex LinkAnnexResult
-linkAnnex key src srcic = do
-	dest <- calcRepo (gitAnnexLocation key)
-	modifyContent dest $ linkAnnex' key src srcic dest
+data LinkAnnexResult = LinkAnnexOk | LinkAnnexFailed | LinkAnnexNoop
 
-{- Hard links (or copies) src to dest, one of which should be the
- - annex object. Updates inode cache for src and for dest when it's
- - changed. -}
-linkAnnex' :: Key -> FilePath -> Maybe InodeCache -> FilePath -> Annex LinkAnnexResult
-linkAnnex' _ _ Nothing _ = return LinkAnnexFailed
-linkAnnex' key src (Just srcic) dest = 
+{- Populates the annex object file by hard linking or copying a source
+ - file to it. -}
+linkToAnnex :: Key -> FilePath -> Maybe InodeCache -> Annex LinkAnnexResult
+linkToAnnex key src srcic = do
+	dest <- calcRepo (gitAnnexLocation key)
+	modifyContent dest $ linkAnnex To key src srcic dest
+
+{- Makes a destination file be a link or copy from the annex object. -}
+linkFromAnnex :: Key -> FilePath -> Annex LinkAnnexResult
+linkFromAnnex key dest = do
+	src <- calcRepo (gitAnnexLocation key)
+	srcic <- withTSDelta (liftIO . genInodeCache src)
+	linkAnnex From key src srcic dest
+
+data FromTo = From | To
+
+{- Hard links or copies from or to the annex object location. 
+ - Updates inode cache.
+ -
+ - Thaws the file that is not the annex object.
+ - When a hard link was made, this necessarily thaws
+ - the annex object too. So, adding an object to the annex this
+ - way can prevent losing the content if the source file
+ - is deleted, but does not guard against modifications.
+ -}
+linkAnnex :: FromTo -> Key -> FilePath -> Maybe InodeCache -> FilePath -> Annex LinkAnnexResult
+linkAnnex _ _ _ Nothing _ = return LinkAnnexFailed
+linkAnnex fromto key src (Just srcic) dest = 
 	ifM (liftIO $ doesFileExist dest)
 		( do
 			Database.Keys.addInodeCaches key [srcic]
 			return LinkAnnexNoop
-		, ifM (linkAnnex'' key src dest)
+		, ifM (linkOrCopy key src dest)
 			( do
-				thawContent dest
-				-- src could have changed while being copied
-				-- to dest
+				thawContent $ case fromto of
+					From -> dest
+					To -> src
+				checksrcunchanged
+			, failed
+			)
+		)
+  where
+	failed = do
+		Database.Keys.addInodeCaches key [srcic]
+		return LinkAnnexFailed
+	checksrcunchanged = do
 		mcache <- withTSDelta (liftIO . genInodeCache src)
 		case mcache of
 			Just srcic' | compareStrong srcic srcic' -> do
@@ -552,32 +573,30 @@ linkAnnex' key src (Just srcic) dest =
 			_ -> do
 				liftIO $ nukeFile dest
 				failed
-			, failed
-			)
+
+{- Hard links or copies src to dest. Only uses a hard link when annex.thin
+ - is enabled and when src is not already hardlinked to elsewhere.
+ - Checks disk reserve before copying, and will fail if not enough space,
+ - or if the dest file already exists. -}
+linkOrCopy :: Key -> FilePath -> FilePath -> Annex Bool
+linkOrCopy key src dest = catchBoolIO $
+	ifM (annexThin <$> Annex.getGitConfig)
+		( hardlink
+		, copy =<< getstat
 		)
   where
-	failed = do
-		Database.Keys.addInodeCaches key [srcic]
-		return LinkAnnexFailed
-
-data LinkAnnexResult = LinkAnnexOk | LinkAnnexFailed | LinkAnnexNoop
-
-{- Hard links or copies src to dest. Only uses a hard link if src
- - is not already hardlinked to elsewhere. Checks disk reserve before
- - copying, and will fail if not enough space, or if the dest file
- - already exists. -}
-linkAnnex'' :: Key -> FilePath -> FilePath -> Annex Bool
-linkAnnex'' key src dest = catchBoolIO $ do
-	s <- liftIO $ getFileStatus src
-	let copy = checkedCopyFile' key src dest s
+	hardlink = do
 #ifndef mingw32_HOST_OS
+		s <- getstat
 		if linkCount s > 1
-		then copy
+			then copy s
 			else liftIO (createLink src dest >> return True)
-			`catchIO` const copy
+				`catchIO` const (copy s)
 #else
-	copy
+		copy s
 #endif
+	copy = checkedCopyFile' key src dest
+	getstat = liftIO $ getFileStatus src
 
 {- Removes the annex object file for a key. Lowlevel. -}
 unlinkAnnex :: Key -> Annex ()

Annex/Ingest.hs

@@ -142,11 +142,11 @@ ingest (Just (LockedDown lockingfile source)) = withTSDelta $ \delta -> do
 
 	gounlocked key (Just cache) s = do
 		-- Remove temp directory hard link first because
-		-- linkAnnex falls back to copying if a file
+		-- linkToAnnex falls back to copying if a file
 		-- already has a hard link.
 		cleanCruft source
 		cleanOldKeys (keyFilename source) key
-		r <- linkAnnex key (keyFilename source) (Just cache)
+		r <- linkToAnnex key (keyFilename source) (Just cache)
 		case r of
 			LinkAnnexFailed -> failure "failed to link to annex"
 			_ -> do
@@ -219,12 +219,12 @@ cleanOldKeys file newkey = do
 				<$> Database.Keys.getAssociatedFiles key
 			fs' <- filterM (`sameInodeCache` caches) fs
 			case fs' of
-				-- If linkAnnex fails, the associated 
+				-- If linkToAnnex fails, the associated 
 				-- file with the content is still present,
 				-- so no need for any recovery.
 				(f:_) -> do
 					ic <- withTSDelta (liftIO . genInodeCache f)
-					void $ linkAnnex key f ic
+					void $ linkToAnnex key f ic
 				_ -> lostcontent
 	  where
 		lostcontent = logStatus key InfoMissing

Annex/ReplaceFile.hs

@@ -18,7 +18,7 @@ import Utility.Tmp
  - which it can write to, and once done the temp file is moved into place
  - and anything else in the temp directory is deleted.
  -
- - The action can throw an IO exception, in which case the temp directory
+ - The action can throw an exception, in which case the temp directory
  - will be deleted, and the existing file will be preserved.
  -
  - Throws an IO exception when it was unable to replace the file.

Command/Fix.hs

@@ -1,6 +1,6 @@
 {- git-annex command
  -
- - Copyright 2010 Joey Hess <id@joeyh.name>
+ - Copyright 2010-2015 Joey Hess <id@joeyh.name>
  -
  - Licensed under the GNU GPL version 3 or higher.
  -}
@@ -11,7 +11,13 @@ module Command.Fix where
 
 import Common.Annex
 import Command
+import Config
+import qualified Annex
+import Annex.Version
+import Annex.ReplaceFile
+import Annex.Content
 import qualified Annex.Queue
+import qualified Database.Keys
 #ifdef WITH_CLIBS
 #ifndef __ANDROID__
 import Utility.Touch
@@ -21,22 +27,66 @@ import Utility.Touch
 cmd :: Command
 cmd = notDirect $ noCommit $ withGlobalOptions annexedMatchingOptions $
 	command "fix" SectionMaintenance
-		"fix up symlinks to point to annexed content"
+		"fix up links to annexed content"
 		paramPaths (withParams seek)
 
 seek :: CmdParams -> CommandSeek
-seek = withFilesInGit $ whenAnnexed start
+seek ps = unlessM crippledFileSystem $ do 
+	fixwhat <- ifM versionSupportsUnlockedPointers
+		( return FixAll
+		, return FixSymlinks
+		)
+	flip withFilesInGit ps $ whenAnnexed $ start fixwhat
 
-{- Fixes the symlink to an annexed file. -}
-start :: FilePath -> Key -> CommandStart
-start file key = do
-	link <- calcRepo $ gitAnnexLink file key
-	stopUnless ((/=) (Just link) <$> liftIO (catchMaybeIO $ readSymbolicLink file)) $ do
+data FixWhat = FixSymlinks | FixAll
+
+start :: FixWhat -> FilePath -> Key -> CommandStart
+start fixwhat file key = do
+	currlink <- liftIO $ catchMaybeIO $ readSymbolicLink file
+	wantlink <- calcRepo $ gitAnnexLink file key
+	case currlink of
+		Just l
+			| l /= wantlink -> fixby $ fixSymlink file wantlink
+			| otherwise -> stop
+		Nothing -> case fixwhat of
+			FixAll -> fixthin
+			FixSymlinks -> stop
+  where
+	fixby a = do
 		showStart "fix" file
-		next $ perform file link
+		next a
+	fixthin = do
+		obj <- calcRepo $ gitAnnexLocation key
+		stopUnless (isUnmodified key file <&&> isUnmodified key obj) $ do
+			thin <- annexThin <$> Annex.getGitConfig
+			fs <- liftIO $ catchMaybeIO $ getFileStatus file
+			os <- liftIO $ catchMaybeIO $ getFileStatus obj
+			case (linkCount <$> fs, linkCount <$> os, thin) of
+				(Just 1, Just 1, True) ->
+					fixby $ makeHardLink file key
+				(Just n, Just n', False) | n > 1 && n == n' ->
+					fixby $ breakHardLink file key obj
+				_ -> stop
 
-perform :: FilePath -> FilePath -> CommandPerform
-perform file link = do
+breakHardLink :: FilePath -> Key -> FilePath -> CommandPerform
+breakHardLink file key obj = do
+	replaceFile file $ \tmp -> 
+		unlessM (checkedCopyFile key obj tmp) $
+			error "unable to break hard link"
+	Database.Keys.storeInodeCaches key [file]
+	next $ return True
+
+makeHardLink :: FilePath -> Key -> CommandPerform
+makeHardLink file key = do
+	replaceFile file $ \tmp -> do
+		r <- linkFromAnnex key tmp
+		case r of
+			LinkAnnexFailed -> error "unable to make hard link"
+			_ -> noop
+	next $ return True
+
+fixSymlink :: FilePath -> FilePath -> CommandPerform
+fixSymlink file link = do
 	liftIO $ do
 #ifdef WITH_CLIBS
 #ifndef __ANDROID__
@@ -53,9 +103,9 @@ perform file link = do
 		maybe noop (\t -> touch file t False) mtime
 #endif
 #endif
-	next $ cleanup file
+	next $ cleanupSymlink file
 
-cleanup :: FilePath -> CommandCleanup
-cleanup file = do
+cleanupSymlink :: FilePath -> CommandCleanup
+cleanupSymlink file = do
 	Annex.Queue.addCommand "add" [Param "--force", Param "--"] [file]
 	return True

Command/Lock.hs

@@ -79,7 +79,7 @@ performNew file key filemodified = do
 		unlessM (sameInodeCache obj (maybeToList mfc)) $ do
 			modifyContent obj $ replaceFile obj $ \tmp -> do
 				unlessM (checkedCopyFile key obj tmp) $
-					error "unable to lock file; need more free disk space"
+					error "unable to lock file"
 			Database.Keys.storeInodeCaches key [obj]
 
 	-- Try to repopulate obj from an unmodified associated file.

Command/PreCommit.hs

@@ -52,7 +52,7 @@ seek ps = lockPreCommitHook $ ifM isDirect
 			, do
 				-- fix symlinks to files being committed
 				flip withFilesToBeCommitted ps $ \f -> 
-					maybe stop (Command.Fix.start f)
+					maybe stop (Command.Fix.start Command.Fix.FixSymlinks f)
 						=<< isAnnexLink f
 				-- inject unlocked files into the annex
 				-- (not needed when repo version uses

Command/Smudge.hs

@@ -100,7 +100,7 @@ ingestLocal file = do
 	-- Hard link (or copy) file content to annex object
 	-- to prevent it from being lost when git checks out
 	-- a branch not containing this file.
-	r <- linkAnnex k file ic
+	r <- linkToAnnex k file ic
 	case r of
 		LinkAnnexFailed -> error "Problem adding file to the annex"
 		LinkAnnexOk -> logStatus k InfoPresent

Command/Unlock.hs

@@ -14,8 +14,6 @@ import Annex.CatFile
 import Annex.Version
 import Annex.Link
 import Annex.ReplaceFile
-import Annex.InodeSentinal
-import Utility.InodeCache
 import Utility.CopyFile
 
 cmd :: Command
@@ -52,13 +50,11 @@ start file key = ifM (isJust <$> isAnnexLink file)
 
 performNew :: FilePath -> Key -> CommandPerform
 performNew dest key = do
-	src <- calcRepo (gitAnnexLocation key)
-	srcic <- withTSDelta (liftIO . genInodeCache src)
 	replaceFile dest $ \tmp -> do
-		r <- linkAnnex' key src srcic tmp
+		r <- linkFromAnnex key tmp
 		case r of
 			LinkAnnexOk -> return ()
-			_ -> error "linkAnnex failed"
+			_ -> error "unlock failed"
 	next $ cleanupNew dest key
 
 cleanupNew ::  FilePath -> Key -> CommandCleanup

Types/GitConfig.hs

@@ -60,6 +60,7 @@ data GitConfig = GitConfig
 	, annexListen :: Maybe String
 	, annexStartupScan :: Bool
 	, annexHardLink :: Bool
+	, annexThin :: Bool
 	, annexDifferences :: Differences
 	, annexUsedRefSpec :: Maybe RefSpec
 	, annexVerify :: Bool
@@ -104,6 +105,7 @@ extractGitConfig r = GitConfig
 	, annexListen = getmaybe (annex "listen")
 	, annexStartupScan = getbool (annex "startupscan") True
 	, annexHardLink = getbool (annex "hardlink") False
+	, annexThin = getbool (annex "thin") False
 	, annexDifferences = getDifferences r
 	, annexUsedRefSpec = either (const Nothing) Just . parseRefSpec 
 		=<< getmaybe (annex "used-refspec")

Upgrade/V5.hs

@@ -8,18 +8,20 @@
 module Upgrade.V5 where
 
 import Common.Annex
+import qualified Annex
 import Config
 import Annex.InodeSentinal
 import Annex.Link
 import Annex.Direct
 import Annex.Content
-import Annex.WorkTree
+import Annex.CatFile
 import qualified Database.Keys
 import qualified Annex.Content.Direct as Direct
 import qualified Git
 import qualified Git.LsFiles
 import qualified Git.Branch
 import Git.FileMode
+import Git.Config
 import Utility.InodeCache
 
 upgrade :: Bool -> Annex Bool
@@ -27,6 +29,11 @@ upgrade automatic = do
 	unless automatic $
 		showAction "v5 to v6"
 	whenM isDirect $ do
+		{- Direct mode makes the same tradeoff of using less disk
+		 - space, with less preservation of old versions of files
+		 - as does annex.thin. -}
+		setConfig (annexConfig "thin") (boolConfig True)
+		Annex.changeGitConfig $ \c -> c { annexThin = True }
 		{- Since upgrade from direct mode changes how files
 		 - are represented in git, commit any changes in the
 		 - work tree first. -}
@@ -70,7 +77,9 @@ upgradeDirectWorkTree = do
 	void $ liftIO clean
   where
 	go (f, Just _sha, Just mode) | isSymLink mode = do
-		mk <- lookupFile f
+		-- Cannot use lookupFile here, as we're in between direct
+		-- mode and v6.
+		mk <- catKeyFile f
 		case mk of
 			Nothing -> noop
 			Just k -> do
@@ -84,13 +93,13 @@ upgradeDirectWorkTree = do
 	go _ = noop
 
 	fromdirect f k = do
-		-- If linkAnnex fails for some reason, the work tree file
+		-- If linkToAnnex fails for some reason, the work tree file
 		-- still has the content; the annex object file is just
 		-- not populated with it. Since the work tree file
 		-- is recorded as an associated file, things will still
 		-- work that way, it's just not ideal.
 		ic <- withTSDelta (liftIO . genInodeCache f)
-		void $ linkAnnex k f ic
+		void $ linkToAnnex k f ic
 	writepointer f k = liftIO $ do
 		nukeFile f
 		writeFile f (formatPointer k)

debian/changelog

@@ -14,6 +14,13 @@ git-annex (6.20151219) UNRELEASED; urgency=medium
     pointer file, and this change can be committed to the git repository.
   * assistant: In v6 mode, adds files in unlocked mode, so they can
     continue to be modified.
+  * Added annex.thin setting, which makes unlocked files in v6 repositories
+    be hard linked to their content, instead of a copy. This saves disk
+    space but means any modification of an unlocked file will lose the local
+    (and possibly only) copy of the old version.
+  * Enable annex.thin by default on upgrade from direct mode to v6, since
+    direct mode made the same tradeoff.
+  * fix: Adjusts unlocked files as configured by annex.thin.
   * persistent-sqlite is now a hard build dependency, since v6 repository
     mode needs it.
   * status: On crippled filesystems, was displaying M for all annexed files

doc/git-annex-fix.mdwn

@@ -1,6 +1,6 @@
 # NAME
 
-git-annex fix - fix up symlinks to point to annexed content
+git-annex fix - fix up links to annexed content
 
 # SYNOPSIS
 
@@ -11,8 +11,11 @@ git annex fix `[path ...]`
 Fixes up symlinks that have become broken to again point to annexed
 content.
 
-This is useful to run if you have been moving the symlinks around,
-but is done automatically when committing a change with git too.
+This is useful to run manually when you have been moving the symlinks
+around, but is done automatically when committing a change with git too.
+
+Also, adjusts unlocked files to be copies or hard links as
+configured by annex.thin.
 
 # OPTIONS
 

doc/git-annex-unlock.mdwn

@@ -10,7 +10,7 @@ git annex unlock `[path ...]`
 
 Normally, the content of annexed files is protected from being changed.
 Unlocking an annexed file allows it to be modified. This replaces the
-symlink for each specified file with a copy of the file's content.
+symlink for each specified file with the file's content.
 You can then modify it and `git annex add` (or `git commit`) to save your
 changes.
 
@@ -22,6 +22,14 @@ can use `git add` to add a fie to the annex in unlocked form. This allows
 workflows where a file starts out unlocked, is modified as necessary, and
 is locked once it reaches its final version.
 
+Normally, unlocking a file requires a copy to be made of its content,
+so that its original content is preserved, while the copy can be modified.
+To use less space, annex.thin can be set to true; this makes a hard link
+to the content be made instead of a copy. (Only when supported by the file
+system, and only in repository version 6.) While this can save considerable
+disk space, any modification made to a file will cause the old version of the
+file to be lost from the local repository. So, enable annex.thin with care.
+
 # OPTIONS
 
 * file matching options

doc/git-annex.mdwn

@@ -904,6 +904,14 @@ Here are all the supported configuration settings.
   will automatically set annex.hardlink and mark the repository as
   untrusted.
 
+* `annex.thin`
+
+  Set this to `true` to make unlocked files be a hard link to their content
+  in the annex, rather than a second copy. (Only when supported by the file
+  system, and only in repository version 6.) This can save considerable
+  disk space, but modification made to a file will lose the local (and
+  possibly only) copy of the old version. So, enable with care.
+
 * `annex.delayadd`
 
   Makes the watch and assistant commands delay for the specified number of

doc/tips/unlocked_files.mdwn

@@ -49,9 +49,11 @@ Or, you can init a new repository in v6 mode.
 	# git init
 	# git annex init --version=6
 
+## using it
+
 Using a v6 repository is easy! Just use regular git commands to add
-and commit files. Under the hood, git will use git-annex to store the file
-contents.
+and commit files. git will use git-annex to store the file contents,
+and the files will be left unlocked.
 
 [[!template id=note text="""
 Want `git add` to add some file contents to the annex, but store the contents of
@@ -70,8 +72,8 @@ smaller files in git itself? Configure annex.largefiles to match the former.
 	# git annex find
 	my_cool_big_file
 
-You can make whatever changes you like to committed files, and commit your
-changes.
+You can make whatever modifications you want to unlocked files, and commit
+your changes.
 
 	# echo more stuff >> my_cool_big_file
 	# git mv my_cool_big_file my_cool_bigger_file
@@ -81,47 +83,62 @@ changes.
 	 delete mode 100644 my_cool_big_file
 	 create mode 100644 my_cool_bigger_file
 
-Under the hood, this uses git's [[todo/smudge]] filter interface,
-and git-annex converts between the content of the big file and a pointer file,
+Under the hood, this uses git's [[todo/smudge]] filter interface, and
+git-annex converts between the content of the big file and a pointer file,
 which is what gets committed to git. 
 
-A v6 repository can have both locked and unlocked files. You can switch 
+A v6 repository can contain both locked and unlocked files. You can switch 
 a file back and forth using the `git annex lock` and `git annex unlock`
 commands. This changes what's stored in git between a git-annex symlink
-(locked) and a git-annex pointer file (unlocked).
+(locked) and a git-annex pointer file (unlocked). To add a file to
+the repository in locked mode, use `git annex add`; to add a file in
+unlocked mode, use `git add`.
 
-## danger will robinson
+## using less disk space
+
+Unlocked files are handy, but they have one significant disadvantage
+compared with locked files: They use more disk space.
+While only one copy of a locked file has to be stored, normally,
+two copies of an unlocked file are stored on disk. One copy is in
+the git work tree, where you can use and modify it,
+and the other is stashed away in `.git/annex/objects` (see [[internals]]).
+
+The reason for that second copy is to preserve the old version of the file,
+if you modify the unlocked file in the work tree. Being able to access
+old versions of files is an important part of git after all.
+
+That's a good safe default. But there are ways to use git-annex that
+make the second copy not be worth keeping:
 
 [[!template id=note text="""
-Double the disk space is used on systems like Windows that don't support
-hard links.
+When a [[direct_mode]] repository is upgraded, annex.thin is automatically
+set, because direct mode made the same single-copy tradeoff.
 """]]
 
-In contrast with locked files, which are quite safe, using unlocked files is a
-little bit dangerous. git-annex tries to avoid storing a duplicate copy of an
-unlocked file in your local repository, in order to not use double the disk
-space. But this means that an unlocked file can be the only copy of that
-version of the file's content. Modify it, and oops, you lost the old version!
+* When you're using git-annex to sync the current version of files acrosss
+  devices, and don't care much about previous versions.
+* When you have set up a backup repository, and use git-annex to copy
+  your files to the backup.
 
-In fact, that happened in the examples above, and you probably didn't notice
-until now. 
+In situations like these, you may want to avoid the overhead of the second
+local copy of unlocked files. There's config setting for that.
 
-	# git checkout HEAD^
-	HEAD is now at 92f2725 added my_cool_big_file to the annex
-	# cat my_cool_big_file 
-	/annex/objects/SHA256E-s30--e7aaf46f227886c10c98f8f76cae681afd0521438c78f958fc27114674b391a4
+	git config annex.thin true
 
-Woah, what's all that?! Well, it's the pointer file that gets checked into
-git. You'd see the same thing if you had used `git annex drop` to drop
-the content of the file from your repository.
+After changing annex.thin, you'll want to fix up the work tree to
+match the new setting:
 
-In the example above, the content wasn't explicitly dropped, but it was
-modified while it was unlocked... and so the old version of the content
-was lost.
+	git annex fix
 
-If this is worrying -- and it should be -- you'll want to keep files locked
-most of the time, or set up a remote and have git-annex copy the content of
-files to the remote as a backup.
+Note that setting annex.thin only has any effect on systems that support
+hard links. Ie, not Windows, and not FAT filesystems.
 
-By the way, don't worry about deleting an unlocked file. That *won't* lose
-its content.
+## tradeoffs
+
+Setting annex.thin can save a lot of disk space, but it's a tradeoff
+between disk usage and safety. 
+
+Keeping files locked is safer and also avoids using unnecessary
+disk space, but trades off easy modification of files.
+
+Pick the tradeoff that's right for you.

doc/todo/smudge.mdwn

@@ -13,10 +13,11 @@ git-annex should use smudge/clean filters.
 	# because it doesn't know it has that name
 	# git commit clears up this mess
 * Interaction with shared clones. Should avoid hard linking from/to a
-  object in a shared clone if either repository has the object unlocked.
-  (And should avoid unlocking an object if it's hard linked to a shared clone,
-  but that's already accomplished because it avoids unlocking an object if
-  it's hard linked at all)
+  object in a shared clone if either repository has the object unlocked
+  with a hard link in place.
+  (And should avoid unlocking an object with a hard link if it's hard
+  linked to a shared clone, but that's already accomplished because it
+  avoids unlocking an object if it's hard linked at all)
 * Make automatic merge conflict resolution work for pointer files.
   - Should probably automatically handle merge conflicts between annex
     symlinks and pointer files too. Maybe by always resulting in a pointer
@@ -46,7 +47,7 @@ git-annex should use smudge/clean filters.
 
 * Eventually (but not yet), make v6 the default for new repositories.
   Note that the assistant forces repos into direct mode; that will need to
-  be changed then.
+  be changed then, and it should enable annex.thin.
 * Later still, remove support for direct mode, and enable automatic
   v5 to v6 upgrades.
 
@@ -158,7 +159,7 @@ cannot directly write to the file or git gets unhappy.
 .. Are very important, otherwise a repo can't scale past the size of the
 smallest client's disk!
 
-It would be nice if the smudge filter could hard link or symlink a work
+It would be nice if the smudge filter could hard link a work
 tree file to the annex object.
 
 But currently, the smudge filter can't modify the work tree file on its own
@@ -184,7 +185,9 @@ smudged file in the work tree when renaming it. It instead deletes the old
 file and asks the smudge filter to smudge the new filename.
 
 So, copies need to be maintained in .git/annex/objects, though it's ok
-to use hard links to the work tree files.
+to use hard links to the work tree files. (Although somewhat unsafe
+since modification of the file will lose the old version. annex.thin
+setting can enable this.)
 
 Even if hard links are used, smudge needs to output the content of an
 annexed file, which will result in duplication when merging in renames of
@@ -241,21 +244,16 @@ git-annex clean:
 
   Generate annex key from filename and content from stdin.
 
-  Hard link .git/annex/objects to the file, if it doesn't already exist.
-  (On platforms not supporting hardlinks, copy the file to
-  .git/annex/objects.)
+  Hard link (annex.thin) or copy .git/annex/objects to the file,
+  if it doesn't already exist.
 
   This is done to prevent losing the only copy of a file when eg
   doing a git checkout of a different branch, or merging a commit that
-  renames or deletes a file. But, no attempt is made to 
+  renames or deletes a file. But, with annex.thin no attempt is made to 
   protect the object from being modified. If a user wants to
   protect object contents from modification, they should use
-  `git annex add`, not `git add`, or they can `git annex lock` after adding,.
-
-  There could be a configuration knob to cause a copy to be made to
-  .git/annex/objects -- useful for those crippled filesystems. It might
-  also drop that copy once the object gets uploaded to another repo ...
-  But that gets complicated quickly.
+  `git annex add`, not `git add`, or they can `git annex lock` after adding,
+  or not enable annex.thin.
 
   Update file map.
 

doc/upgrades.mdwn

@@ -72,10 +72,6 @@ The behavior of some commands changes in an upgraded repository:
 * `git annex unlock` and `git annex lock` change how the pointer to 
   the annexed content is stored in git.
 
-If a repository is only used in indirect mode, you can use git-annex
-v5 and v6 in different clones of the same indirect mode repository without
-problems.
-
 On upgrade, all files in a direct mode repository will be converted to
 unlocked files. The upgrade will stage changes to all annexed files in
 the git repository, which you can then commit.