Merge branch 'master' of ssh://git-annex.branchable.com
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commit
0760086f27
5 changed files with 140 additions and 10 deletions
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doc/bugs/map_error_after_forget.mdwn
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doc/bugs/map_error_after_forget.mdwn
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### Please describe the problem.
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I ran forget to clean up dead repos in my map, now map won't run.
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### What steps will reproduce the problem?
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$ git annex forget --drop-dead --force
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....
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$ git annex map
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### What version of git-annex are you using? On what operating system?
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(xubuntu)
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$ git annex version
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git-annex version: 5.20140306-g6e2e021
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build flags: Assistant Webapp Pairing Testsuite S3 WebDAV Inotify DBus XMPP Feeds Quvi TDFA CryptoHash
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key/value backends: SHA256E SHA1E SHA512E SHA224E SHA384E SKEIN256E SKEIN512E SHA256 SHA1 SHA512 SHA224 SHA384 SKEIN256 SKEIN512 WORM URL
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remote types: git gcrypt S3 bup directory rsync web webdav tahoe glacier hook external
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local repository version: 5
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supported repository version: 5
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upgrade supported from repository versions: 0 1 2 4
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### Please provide any additional information below.
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[[!format sh """
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$ git annex map --debug
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map /media/archive/annex ok
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[2014-03-15 09:17:33 CDT] read: git ["config","--null","--list"]
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[2014-03-15 09:17:33 CDT] read: git ["config","--null","--list"]
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[2014-03-15 09:17:33 CDT] read: git ["config","--null","--list"]
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git-annex: user error (git ["config","--null","--list"] exited 126)
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failed
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git-annex: map: 1 failed
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"""]]
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@ -0,0 +1,10 @@
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[[!comment format=mdwn
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username="http://joeyh.name/"
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ip="209.250.56.154"
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subject="comment 1"
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date="2014-03-15T15:53:17Z"
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content="""
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This is a bit tricky because I'm not sure which repository the map is failing on. Probably the one that comes after /media/archive/annex in the `git remote list` output.
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If you go to each of the remotes and run `git config --null --list`, does it exit nonzero in any of them?
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"""]]
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@ -0,0 +1,84 @@
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### Please describe the problem.
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#### git annex unused fails with the message:
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...
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86731 SHA256E-s13243--a6c5fe9710975e0b0ca01ec0b7eca6068a01b1b1c06adbd8ad7921e26d3b076d.h
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86732 SHA256E-s12872--f50b73d313a116ea21649d684f601840dbc8ed3c264165dd77fa5d54a1c57464.c
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86733 SHA256E-s6557264--6b502d56378b9919fd3c54c3bb2dc2906a326be8e9d477a8f3518419929f4706.dll
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86734 SHA256E-s141--c6227fe715dab2b4447b6e43af2b170ac66d82043aa81a14013c56be922e11db.out
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86735 SHA256E-s6564--ec4bcd833d071fff7d8cc81b908558acdeae2c9ba62f7d65b584effe6b36a8c6.c
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git-annex: /bluepool/data/.git/annex/unused32594.tmp: commitBuffer: invalid argument (invalid character)
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failed
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git-annex: unused: 1 failed
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#### A subsequent git annex dropunused does not work (there are 86735 files unused). A simple:
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"git annex dropunused 1-10" produces:
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git-annex: 1 not valid (run git annex unused for list)
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#### It seems that the list of unused files was not saved (committed)
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### What steps will reproduce the problem?
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I suspect it can be reproduced by having files with non-english characters.
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This should be the sequence of commands to reproduce if one knew the invalid character:
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git init .
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git annex init .
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touch "Invalid character in file name"
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git annex add "Invalid character in file name"
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git commit
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git rm "Invalid character in file name"
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git commit
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git unused
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However, I usually have "git annex watch" running so this might also have an influence on how (maybe not-escaped) filenames are added.
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### What version of git-annex are you using? On what operating system?
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git annex standalone:
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git-annex version: 5.20140306-g6e2e021
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build flags: Assistant Webapp Pairing Testsuite S3 WebDAV Inotify DBus XMPP Feeds Quvi TDFA CryptoHash
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key/value backends: SHA256E SHA1E SHA512E SHA224E SHA384E SKEIN256E SKEIN512E SHA256 SHA1 SHA512 SHA224 SHA384 SKEIN256 SKEIN512 WORM URL
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remote types: git gcrypt S3 bup directory rsync web webdav tahoe glacier hook external
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local repository version: 5
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supported repository version: 5
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upgrade supported from repository versions: 0 1 2 4
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Ubuntu Raring: Linux i3 3.11.4-031104-generic
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### Please provide any additional information below.
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I guess I could provide the full output of git annex unused but I would rather not put it into this bug report for privacy reasons.
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[[!format sh """
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# If you can, paste a complete transcript of the problem occurring here.
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# If the problem is with the git-annex assistant, paste in .git/annex/daemon.log
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# End of transcript or log.
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"""]]
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@ -3,14 +3,15 @@ the last release unexpectedly fixed XMPP SIGILL on some OSX machines.
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Apparently when I rebuilt all the libraries recently, it somehow fixed that
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[[old_unsolved_bug|bugs/Share_with_friends_crash_in_osx]].
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RichiH suggested "wrt balloning memory on repair: can you read in broken
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[RichiH](http://richardhartmann.de/) suggested "wrt ballooning memory on
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repair: can you read in broken
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stuff and simply stop reading once you reach a certain threshold, then
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start repairing, re-run fsck, etc?" .. I had considered that but was
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not sure it would work. I think I've gotten it to work.
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Now working on a design for using a [[design/caching_database]]
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for some parts of git-annex. My initial benchmarks using sqlite
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for some parts of git-annex. My initial benchmarks using SQLite
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indicate it would slow down associated file lookups by nearly an order of
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magnitude compared with the current ".map files" implementation.
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(But would scale better in edge cases). OTOH, using a sqlite
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(But would scale better in edge cases). OTOH, using a SQLite
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database to index metadata for use in views looks very promising.
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@ -7,14 +7,14 @@ Not sure I'm ready to dive into that yet, so instead spent the rest of the
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day working on small bugfixes and improvemnts. Only two significant ones..
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Made the webapp use a constant time string comparison (from `securemem`)
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to check its auth token is valid. Could avoid a potential timing attack to
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guess the auth token, although that is theoretical. Just best practice to
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do this.
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to check if its auth token is valid. This could help avoid a potential
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timing attack to guess the auth token, although that is theoretical.
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Just best practice to do this.
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Seems that openssh 6.5p1 had another hidden surprise (in addition to
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its now-fixed bug in handing hostnames in `.ssh/config`) -- it broke
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the method git-annex was using for stopping a cached ssh connection,
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which led to some timeouts for failing DNS lookups. If you see git-annex
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seeming to stall for a few seconds at startup/shutdown, that's maybe why
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(--debug will tell for sure). Seem to have found a workaround that avoids
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the problem.
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which led to some timeouts for failing DNS lookups. If git-annex seems
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to stall for a few seconds at startup/shutdown, that may be why
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(--debug will say for sure). I seem to have found a workaround that
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avoids this problem.
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