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I have my laptop, my server and my usb drive. My server is a gcrypted remote via ssh. My laptop is just a repo that's referenced as a remote with a filepath.
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I do git annex copy --to server, and let it copy stuff. I repeat the same thing for the usb drive.
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Afterwards, I do git annex whereis, and I only get 2 copies showing - my laptop and my usb drive. Likewise, since I set numcopies to 2, it won't let me drop anything at all, because it doesn't know there's a copy on my server.
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Anything I can do about this? (What further info do you need?)
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