Earlier this week, I somehow lost a ton of files from my annex -- by switching on the command line from indirect to direct mode while the assistant was running, I think. I'm not sure.
Anyway, by "lost" I mean "lost the symlinks to," because git-annex defaults to keeping content around till you tell it otherwise. So I still had the content in the repos on my two backup drives. All I needed was the symlinks back.
But how to figure out exactly what I lost and get it back?