53 lines
3 KiB
Text
53 lines
3 KiB
Text
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### Please describe the problem.
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Concurrent operations fail due to .git/index.lock being held.
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### What steps will reproduce the problem?
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git annex fromkey , under high concurrency . Maybe more retries could be added, before failing?
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### What version of git-annex are you using? On what operating system?
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(master_env_py27_v28) [11:57 AM /data/ilya-work]$ git annex version
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git-annex version: 7.20181031-g43f0718
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build flags: Assistant Webapp Pairing S3(multipartupload)(storageclasses) WebDAV Inotify TorrentParser MagicMime Feeds Testsuite
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dependency versions: aws-0.17.1 bloomfilter-2.0.1.0 cryptonite-0.23 DAV-1.3.1 feed-0.3.12.0 ghc-8.0.2 http-client-0.5.7.0 persistent-s\
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qlite-2.6.2 torrent-10000.1.1 uuid-1.3.13 yesod-1.4.5
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key/value backends: SHA256E SHA256 SHA512E SHA512 SHA224E SHA224 SHA384E SHA384 SHA3_256E SHA3_256 SHA3_512E SHA3_512 SHA3_224E SHA3_2\
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24 SHA3_384E SHA3_384 SKEIN256E SKEIN256 SKEIN512E SKEIN512 BLAKE2B256E BLAKE2B256 BLAKE2B512E BLAKE2B512 BLAKE2B160E BLAKE2B160 BLAKE\
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2B224E BLAKE2B224 BLAKE2B384E BLAKE2B384 BLAKE2S256E BLAKE2S256 BLAKE2S160E BLAKE2S160 BLAKE2S224E BLAKE2S224 BLAKE2SP256E BLAKE2SP256\
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BLAKE2SP224E BLAKE2SP224 SHA1E SHA1 MD5E MD5 WORM URL
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remote types: git gcrypt p2p S3 bup directory rsync web bittorrent webdav adb tahoe glacier ddar hook external
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operating system: linux x86_64
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supported repository versions: 5 7
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upgrade supported from repository versions: 0 1 2 3 4 5 6
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local repository version: 5
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(master_env_py27_v28) [12:00 PM /data/ilya-work]$ uname -a
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Linux ip-172-31-80-119 4.14.77-70.82.amzn1.x86_64 #1 SMP Mon Dec 3 20:01:27 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
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(master_env_py27_v28) [12:00 PM /data/ilya-work]$
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-
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### Please provide any additional information below.
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[[!format sh """
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# If you can, paste a complete transcript of the problem occurring here.
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# If the problem is with the git-annex assistant, paste in .git/annex/daemon.log
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2018-12-06 01:22:20,410 - workflow_utils:183:_run - INFO - running command: git annex fromkey --force MD5E-s19330--3541df84bcd805aa205\
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f9ffdca6cc21a.fasta pipelines/dxfailed/analysis-FKPG5480Z3yz3yG21G7F47z1/files/originalInput/stage-4.reference_genome_fasta/0/ref-ebov\
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-makona_C15.fasta cwd=/data/ilya-work
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fatal: Unable to create '/data/ilya-work/.git/index.lock': File exists.
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Another git process seems to be running in this repository, e.g.
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an editor opened by 'git commit'. Please make sure all processes
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are terminated then try again. If it still fails, a git process
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may have crashed in this repository earlier:
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remove the file manually to continue.
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git-annex: user error (xargs ["-0","git","--git-dir=.git","--work-tree=.","--literal-pathspecs","add","--"] exited 123)
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T
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# End of transcript or log.
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"""]]
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### Have you had any luck using git-annex before? (Sometimes we get tired of reading bug reports all day and a lil' positive end note does wonders)
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It's become an indispensable tool. E.g. I just used it to moved data from more-expensive to less-expensive storage, without needing to worry about getting it back when needed; this frees up not just disk space but mental space :)
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