git-annex/Command/Unused.hs

{- git-annex command
 -
 - Copyright 2010-2012 Joey Hess <joey@kitenet.net>
 -
 - Licensed under the GNU GPL version 3 or higher.
 -}

{-# LANGUAGE BangPatterns #-}

module Command.Unused where

import qualified Data.Set as S
import qualified Data.ByteString.Lazy as L
import Data.BloomFilter
import Data.BloomFilter.Easy
import Data.BloomFilter.Hash
import Control.Monad.ST
import qualified Data.Map as M

import Common.Annex
import Command
import Logs.Unused
import Annex.Content
import Utility.FileMode
import Logs.Location
import Logs.Transfer
import qualified Annex
import qualified Git
import qualified Git.Command
import qualified Git.Ref
import qualified Git.LsFiles as LsFiles
import qualified Git.LsTree as LsTree
import qualified Backend
import qualified Remote
import qualified Annex.Branch
import qualified Option
import Annex.CatFile
import Types.Key

def :: [Command]
def = [withOptions [fromOption] $ command "unused" paramNothing seek
	SectionMaintenance "look for unused file content"]

fromOption :: Option
fromOption = Option.field ['f'] "from" paramRemote "remote to check for unused content"

seek :: [CommandSeek]
seek = [withNothing start]

{- Finds unused content in the annex. -} 
start :: CommandStart
start = do
	from <- Annex.getField $ Option.name fromOption
	let (name, action) = case from of
		Nothing -> (".", checkUnused)
		Just "." -> (".", checkUnused)
		Just "here" -> (".", checkUnused)
		Just n -> (n, checkRemoteUnused n)
	showStart "unused" name
	next action

checkUnused :: CommandPerform
checkUnused = chain 0
	[ check "" unusedMsg $ findunused =<< Annex.getState Annex.fast
	, check "bad" staleBadMsg $ staleKeysPrune gitAnnexBadDir False
	, check "tmp" staleTmpMsg $ staleKeysPrune gitAnnexTmpDir True
	]
  where
	findunused True = do
		showNote "fast mode enabled; only finding stale files"
		return []
	findunused False = do
		showAction "checking for unused data"
		excludeReferenced =<< getKeysPresent
	chain _ [] = next $ return True
	chain v (a:as) = do
		v' <- a v
		chain v' as

checkRemoteUnused :: String -> CommandPerform
checkRemoteUnused name = go =<< fromJust <$> Remote.byNameWithUUID (Just name)
  where
	go r = do
		showAction "checking for unused data"
		_ <- check "" (remoteUnusedMsg r) (remoteunused r) 0
		next $ return True
	remoteunused r = excludeReferenced <=< loggedKeysFor $ Remote.uuid r

check :: FilePath -> ([(Int, Key)] -> String) -> Annex [Key] -> Int -> Annex Int
check file msg a c = do
	l <- a
	let unusedlist = number c l
	unless (null l) $ showLongNote $ msg unusedlist
	writeUnusedLog file unusedlist
	return $ c + length l

number :: Int -> [a] -> [(Int, a)]
number _ [] = []
number n (x:xs) = (n+1, x) : number (n+1) xs

table :: [(Int, Key)] -> [String]
table l = "  NUMBER  KEY" : map cols l
  where
	cols (n,k) = "  " ++ pad 6 (show n) ++ "  " ++ key2file k
	pad n s = s ++ replicate (n - length s) ' '

staleTmpMsg :: [(Int, Key)] -> String
staleTmpMsg t = unlines $ 
	["Some partially transferred data exists in temporary files:"]
	++ table t ++ [dropMsg Nothing]

staleBadMsg :: [(Int, Key)] -> String
staleBadMsg t = unlines $ 
	["Some corrupted files have been preserved by fsck, just in case:"]
	++ table t ++ [dropMsg Nothing]

unusedMsg :: [(Int, Key)] -> String
unusedMsg u = unusedMsg' u
	["Some annexed data is no longer used by any files:"]
	[dropMsg Nothing]
unusedMsg' :: [(Int, Key)] -> [String] -> [String] -> String
unusedMsg' u header trailer = unlines $
	header ++
	table u ++
	["(To see where data was previously used, try: git log --stat -S'KEY')"] ++
	trailer

remoteUnusedMsg :: Remote -> [(Int, Key)] -> String
remoteUnusedMsg r u = unusedMsg' u
	["Some annexed data on " ++ name ++ " is not used by any files:"]
	[dropMsg $ Just r]
  where
	name = Remote.name r 

dropMsg :: Maybe Remote -> String
dropMsg Nothing = dropMsg' ""
dropMsg (Just r) = dropMsg' $ " --from " ++ Remote.name r
dropMsg' :: String -> String
dropMsg' s = "\nTo remove unwanted data: git-annex dropunused" ++ s ++ " NUMBER\n"

{- Finds keys in the list that are not referenced in the git repository.
 -
 - Strategy:
 -
 - * Build a bloom filter of all keys referenced by symlinks. This 
 -   is the fastest one to build and will filter out most keys.
 - * If keys remain, build a second bloom filter of keys referenced by
 -   all branches.
 - * The list is streamed through these bloom filters lazily, so both will
 -   exist at the same time. This means that twice the memory is used,
 -   but they're relatively small, so the added complexity of using a
 -   mutable bloom filter does not seem worthwhile.
 - * Generating the second bloom filter can take quite a while, since
 -   it needs enumerating all keys in all git branches. But, the common
 -   case, if the second filter is needed, is for some keys to be globally
 -   unused, and in that case, no short-circuit is possible.
 -   Short-circuiting if the first filter filters all the keys handles the
 -   other common case.
 -}
excludeReferenced :: [Key] -> Annex [Key]
excludeReferenced ks = runfilter firstlevel ks >>= runfilter secondlevel
  where
	runfilter _ [] = return [] -- optimisation
	runfilter a l = bloomFilter show l <$> genBloomFilter show a
	firstlevel = withKeysReferencedM
	secondlevel = withKeysReferencedInGit

{- Finds items in the first, smaller list, that are not
 - present in the second, larger list.
 - 
 - Constructing a single set, of the list that tends to be
 - smaller, appears more efficient in both memory and CPU
 - than constructing and taking the S.difference of two sets. -}
exclude :: Ord a => [a] -> [a] -> [a]
exclude [] _ = [] -- optimisation
exclude smaller larger = S.toList $ remove larger $ S.fromList smaller
  where
	remove a b = foldl (flip S.delete) b a

{- A bloom filter capable of holding half a million keys with a
 - false positive rate of 1 in 1000 uses around 8 mb of memory,
 - so will easily fit on even my lowest memory systems.
 -}
bloomCapacity :: Annex Int
bloomCapacity = fromMaybe 500000 . annexBloomCapacity <$> Annex.getGitConfig
bloomAccuracy :: Annex Int
bloomAccuracy = fromMaybe 1000 . annexBloomAccuracy <$> Annex.getGitConfig
bloomBitsHashes :: Annex (Int, Int)
bloomBitsHashes = do
	capacity <- bloomCapacity
	accuracy <- bloomAccuracy
	return $ suggestSizing capacity (1/ fromIntegral accuracy)

{- Creates a bloom filter, and runs an action, such as withKeysReferenced,
 - to populate it.
 -
 - The action is passed a callback that it can use to feed values into the
 - bloom filter. 
 -
 - Once the action completes, the mutable filter is frozen
 - for later use.
 -}
genBloomFilter :: Hashable t => (v -> t) -> ((v -> Annex ()) -> Annex b) -> Annex (Bloom t)
genBloomFilter convert populate = do
	(numbits, numhashes) <- bloomBitsHashes
	bloom <- lift $ newMB (cheapHashes numhashes) numbits
	_ <- populate $ \v -> lift $ insertMB bloom (convert v)
	lift $ unsafeFreezeMB bloom
  where
	lift = liftIO . stToIO

bloomFilter :: Hashable t => (v -> t) -> [v] -> Bloom t -> [v]
bloomFilter convert l bloom = filter (\k -> convert k `notElemB` bloom) l

{- Given an initial value, folds it with each key referenced by
 - symlinks in the git repo. -}
withKeysReferenced :: v -> (Key -> v -> v) -> Annex v
withKeysReferenced initial a = withKeysReferenced' Nothing initial folda
  where
	folda k _ v = return $ a k v

{- Runs an action on each referenced key in the git repo. -}
withKeysReferencedM :: (Key -> Annex ()) -> Annex ()
withKeysReferencedM a = withKeysReferenced' Nothing () calla
  where
	calla k _ _ = a k

{- Folds an action over keys and files referenced in a particular directory. -}
withKeysFilesReferencedIn :: FilePath -> v -> (Key -> FilePath -> v -> Annex v) -> Annex v
withKeysFilesReferencedIn = withKeysReferenced' . Just

withKeysReferenced' :: Maybe FilePath -> v -> (Key -> FilePath -> v -> Annex v) -> Annex v
withKeysReferenced' mdir initial a = do
	(files, clean) <- getfiles
	r <- go initial files
	liftIO $ void clean
	return r
  where
	getfiles = case mdir of
		Nothing -> ifM isBareRepo
			( return ([], return True)
			, do
				top <- fromRepo Git.repoPath
				inRepo $ LsFiles.inRepo [top]
			)
		Just dir -> inRepo $ LsFiles.inRepo [dir]
	go v [] = return v
	go v (f:fs) = do
		x <- Backend.lookupFile f
		case x of
			Nothing -> go v fs
			Just (k, _) -> do
				!v' <- a k f v
				go v' fs

withKeysReferencedInGit :: (Key -> Annex ()) -> Annex ()
withKeysReferencedInGit a = do
	rs <- relevantrefs <$> showref
	forM_ rs (withKeysReferencedInGitRef a)
  where
	showref = inRepo $ Git.Command.pipeReadStrict [Param "show-ref"]
	relevantrefs = map (Git.Ref .  snd) .
		nubBy uniqref .
		filter ourbranches .
		map (separate (== ' ')) . lines
	uniqref (x, _) (y, _) = x == y
	ourbranchend = '/' : show Annex.Branch.name
	ourbranches (_, b) = not (ourbranchend `isSuffixOf` b)
		&& not ("refs/synced/" `isPrefixOf` b)

withKeysReferencedInGitRef :: (Key -> Annex ()) -> Git.Ref -> Annex ()
withKeysReferencedInGitRef a ref = do
	showAction $ "checking " ++ Git.Ref.describe ref
	go <=< inRepo $ LsTree.lsTree ref
  where
	go [] = noop
	go (l:ls)
		| isSymLink (LsTree.mode l) = do
			content <- encodeW8 . L.unpack
				<$> catFile ref (LsTree.file l)
			case fileKey (takeFileName content) of
				Nothing -> go ls
				Just k -> do
					a k
					go ls
		| otherwise = go ls

{- Looks in the specified directory for bad/tmp keys, and returns a list
 - of those that might still have value, or might be stale and removable.
 - 
 - Also, stale keys that can be proven to have no value are deleted.
 -}
staleKeysPrune :: (Git.Repo -> FilePath) -> Bool -> Annex [Key]
staleKeysPrune dirspec nottransferred = do
	contents <- staleKeys dirspec
	
	dups <- filterM inAnnex contents
	let stale = contents `exclude` dups

	dir <- fromRepo dirspec
	liftIO $ forM_ dups $ \t -> removeFile $ dir </> keyFile t

	if nottransferred
		then do
			inprogress <- S.fromList . map (transferKey . fst)
				<$> getTransfers
			return $ filter (`S.notMember` inprogress) stale
		else return stale

staleKeys :: (Git.Repo -> FilePath) -> Annex [Key]
staleKeys dirspec = do
	dir <- fromRepo dirspec
	ifM (liftIO $ doesDirectoryExist dir)
		( do
			contents <- liftIO $ getDirectoryContents dir
			files <- liftIO $ filterM doesFileExist $
				map (dir </>) contents
			return $ mapMaybe (fileKey . takeFileName) files
		, return []
		)

data UnusedMaps = UnusedMaps
	{ unusedMap :: UnusedMap
	, unusedBadMap :: UnusedMap
	, unusedTmpMap :: UnusedMap
	}

{- Read unused logs once, and pass the maps to each start action. -}
withUnusedMaps :: (UnusedMaps -> Int -> CommandStart) -> CommandSeek
withUnusedMaps a params = do
	unused <- readUnusedLog ""
	unusedbad <- readUnusedLog "bad"
	unusedtmp <- readUnusedLog "tmp"
	return $ map (a $ UnusedMaps unused unusedbad unusedtmp) $
		concatMap unusedSpec params

unusedSpec :: String -> [Int]
unusedSpec spec
	| "-" `isInfixOf` spec = range $ separate (== '-') spec
	| otherwise = maybe badspec (: []) (readish spec)
  where
	range (a, b) = case (readish a, readish b) of
		(Just x, Just y) -> [x..y]
		_ -> badspec
	badspec = error $ "Expected number or range, not \"" ++ spec ++ "\""

{- Start action for unused content. Finds the number in the maps, and
 - calls either of 3 actions, depending on the type of unused file. -}
startUnused :: String
	-> (Key -> CommandPerform)
	-> (Key -> CommandPerform) 
	-> (Key -> CommandPerform)
	-> UnusedMaps -> Int -> CommandStart
startUnused message unused badunused tmpunused maps n = search
	[ (unusedMap maps, unused)
	, (unusedBadMap maps, badunused)
	, (unusedTmpMap maps, tmpunused)
	]
  where
	search [] = error $ show n ++ " not valid (run git annex unused for list)"
	search ((m, a):rest) =
		case M.lookup n m of
			Nothing -> search rest
			Just key -> do
				showStart message (show n)
				next $ a key