git-annex/Backend/SHA.hs

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{- git-annex SHA backends
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-
Use cryptohash rather than SHA for hashing. This is a massive win on OSX, which doesn't have a sha256sum normally. Only use external hash commands when the file is > 1 mb, since cryptohash is quite close to them in speed. SHA is still used to calculate HMACs. I don't quite understand cryptohash's API for those. Used the following benchmark to arrive at the 1 mb number. 1 mb file: benchmarking sha256/internal mean: 13.86696 ms, lb 13.83010 ms, ub 13.93453 ms, ci 0.950 std dev: 249.3235 us, lb 162.0448 us, ub 458.1744 us, ci 0.950 found 5 outliers among 100 samples (5.0%) 4 (4.0%) high mild 1 (1.0%) high severe variance introduced by outliers: 10.415% variance is moderately inflated by outliers benchmarking sha256/external mean: 14.20670 ms, lb 14.17237 ms, ub 14.27004 ms, ci 0.950 std dev: 230.5448 us, lb 150.7310 us, ub 427.6068 us, ci 0.950 found 3 outliers among 100 samples (3.0%) 2 (2.0%) high mild 1 (1.0%) high severe 2 mb file: benchmarking sha256/internal mean: 26.44270 ms, lb 26.23701 ms, ub 26.63414 ms, ci 0.950 std dev: 1.012303 ms, lb 925.8921 us, ub 1.122267 ms, ci 0.950 variance introduced by outliers: 35.540% variance is moderately inflated by outliers benchmarking sha256/external mean: 26.84521 ms, lb 26.77644 ms, ub 26.91433 ms, ci 0.950 std dev: 347.7867 us, lb 210.6283 us, ub 571.3351 us, ci 0.950 found 6 outliers among 100 samples (6.0%) import Crypto.Hash import Data.ByteString.Lazy as L import Criterion.Main import Common testfile :: FilePath testfile = "/run/shm/data" -- on ram disk main = defaultMain [ bgroup "sha256" [ bench "internal" $ whnfIO internal , bench "external" $ whnfIO external ] ] sha256 :: L.ByteString -> Digest SHA256 sha256 = hashlazy internal :: IO String internal = show . sha256 <$> L.readFile testfile external :: IO String external = do s <- readProcess "sha256sum" [testfile] return $ fst $ separate (== ' ') s
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- Copyright 2011-2013 Joey Hess <joey@kitenet.net>
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-
- Licensed under the GNU GPL version 3 or higher.
-}
module Backend.SHA (backends) where
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import Common.Annex
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import qualified Annex
import Types.Backend
import Types.Key
import Types.KeySource
Use cryptohash rather than SHA for hashing. This is a massive win on OSX, which doesn't have a sha256sum normally. Only use external hash commands when the file is > 1 mb, since cryptohash is quite close to them in speed. SHA is still used to calculate HMACs. I don't quite understand cryptohash's API for those. Used the following benchmark to arrive at the 1 mb number. 1 mb file: benchmarking sha256/internal mean: 13.86696 ms, lb 13.83010 ms, ub 13.93453 ms, ci 0.950 std dev: 249.3235 us, lb 162.0448 us, ub 458.1744 us, ci 0.950 found 5 outliers among 100 samples (5.0%) 4 (4.0%) high mild 1 (1.0%) high severe variance introduced by outliers: 10.415% variance is moderately inflated by outliers benchmarking sha256/external mean: 14.20670 ms, lb 14.17237 ms, ub 14.27004 ms, ci 0.950 std dev: 230.5448 us, lb 150.7310 us, ub 427.6068 us, ci 0.950 found 3 outliers among 100 samples (3.0%) 2 (2.0%) high mild 1 (1.0%) high severe 2 mb file: benchmarking sha256/internal mean: 26.44270 ms, lb 26.23701 ms, ub 26.63414 ms, ci 0.950 std dev: 1.012303 ms, lb 925.8921 us, ub 1.122267 ms, ci 0.950 variance introduced by outliers: 35.540% variance is moderately inflated by outliers benchmarking sha256/external mean: 26.84521 ms, lb 26.77644 ms, ub 26.91433 ms, ci 0.950 std dev: 347.7867 us, lb 210.6283 us, ub 571.3351 us, ci 0.950 found 6 outliers among 100 samples (6.0%) import Crypto.Hash import Data.ByteString.Lazy as L import Criterion.Main import Common testfile :: FilePath testfile = "/run/shm/data" -- on ram disk main = defaultMain [ bgroup "sha256" [ bench "internal" $ whnfIO internal , bench "external" $ whnfIO external ] ] sha256 :: L.ByteString -> Digest SHA256 sha256 = hashlazy internal :: IO String internal = show . sha256 <$> L.readFile testfile external :: IO String external = do s <- readProcess "sha256sum" [testfile] return $ fst $ separate (== ' ') s
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import Utility.Hash
import Utility.ExternalSHA
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import qualified Build.SysConfig as SysConfig
import qualified Data.ByteString.Lazy as L
import Data.Char
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type SHASize = Int
{- Order is slightly significant; want SHA256 first, and more general
- sizes earlier. -}
sizes :: [Int]
sizes = [256, 1, 512, 224, 384]
{- The SHA256E backend is the default. -}
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backends :: [Backend]
backends = catMaybes $ map genBackendE sizes ++ map genBackend sizes
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genBackend :: SHASize -> Maybe Backend
genBackend size = Just $ Backend
{ name = shaName size
, getKey = keyValue size
, fsckKey = Just $ checkKeyChecksum size
, canUpgradeKey = Just $ needsUpgrade
}
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genBackendE :: SHASize -> Maybe Backend
genBackendE size = do
b <- genBackend size
return $ b
{ name = shaNameE size
, getKey = keyValueE size
}
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shaName :: SHASize -> String
shaName size = "SHA" ++ show size
shaNameE :: SHASize -> String
shaNameE size = shaName size ++ "E"
shaN :: SHASize -> FilePath -> Integer -> Annex String
shaN shasize file filesize = do
showAction "checksum"
liftIO $ case shaCommand shasize filesize of
Left sha -> sha <$> L.readFile file
Right command ->
either error return
=<< externalSHA command shasize file
shaCommand :: SHASize -> Integer -> Either (L.ByteString -> String) String
shaCommand shasize filesize
| shasize == 1 = use SysConfig.sha1 sha1
| shasize == 256 = use SysConfig.sha256 sha256
| shasize == 224 = use SysConfig.sha224 sha224
| shasize == 384 = use SysConfig.sha384 sha384
| shasize == 512 = use SysConfig.sha512 sha512
| otherwise = error $ "bad sha size " ++ show shasize
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where
Use cryptohash rather than SHA for hashing. This is a massive win on OSX, which doesn't have a sha256sum normally. Only use external hash commands when the file is > 1 mb, since cryptohash is quite close to them in speed. SHA is still used to calculate HMACs. I don't quite understand cryptohash's API for those. Used the following benchmark to arrive at the 1 mb number. 1 mb file: benchmarking sha256/internal mean: 13.86696 ms, lb 13.83010 ms, ub 13.93453 ms, ci 0.950 std dev: 249.3235 us, lb 162.0448 us, ub 458.1744 us, ci 0.950 found 5 outliers among 100 samples (5.0%) 4 (4.0%) high mild 1 (1.0%) high severe variance introduced by outliers: 10.415% variance is moderately inflated by outliers benchmarking sha256/external mean: 14.20670 ms, lb 14.17237 ms, ub 14.27004 ms, ci 0.950 std dev: 230.5448 us, lb 150.7310 us, ub 427.6068 us, ci 0.950 found 3 outliers among 100 samples (3.0%) 2 (2.0%) high mild 1 (1.0%) high severe 2 mb file: benchmarking sha256/internal mean: 26.44270 ms, lb 26.23701 ms, ub 26.63414 ms, ci 0.950 std dev: 1.012303 ms, lb 925.8921 us, ub 1.122267 ms, ci 0.950 variance introduced by outliers: 35.540% variance is moderately inflated by outliers benchmarking sha256/external mean: 26.84521 ms, lb 26.77644 ms, ub 26.91433 ms, ci 0.950 std dev: 347.7867 us, lb 210.6283 us, ub 571.3351 us, ci 0.950 found 6 outliers among 100 samples (6.0%) import Crypto.Hash import Data.ByteString.Lazy as L import Criterion.Main import Common testfile :: FilePath testfile = "/run/shm/data" -- on ram disk main = defaultMain [ bgroup "sha256" [ bench "internal" $ whnfIO internal , bench "external" $ whnfIO external ] ] sha256 :: L.ByteString -> Digest SHA256 sha256 = hashlazy internal :: IO String internal = show . sha256 <$> L.readFile testfile external :: IO String external = do s <- readProcess "sha256sum" [testfile] return $ fst $ separate (== ' ') s
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use Nothing hasher = Left $ show . hasher
use (Just c) hasher
{- Use builtin, but slightly slower hashing for
- smallish files. Cryptohash benchmarks 90 to 101%
- faster than external hashers, depending on the hash
- and system. So there is no point forking an external
- process unless the file is large. -}
| filesize < 1048576 = use Nothing hasher
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| otherwise = Right c
{- A key is a checksum of its contents. -}
keyValue :: SHASize -> KeySource -> Annex (Maybe Key)
keyValue shasize source = do
let file = contentLocation source
stat <- liftIO $ getFileStatus file
let filesize = fromIntegral $ fileSize stat
s <- shaN shasize file filesize
return $ Just $ stubKey
{ keyName = s
, keyBackendName = shaName shasize
, keySize = Just filesize
}
{- Extension preserving keys. -}
keyValueE :: SHASize -> KeySource -> Annex (Maybe Key)
keyValueE size source = keyValue size source >>= maybe (return Nothing) addE
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where
addE k = return $ Just $ k
{ keyName = keyName k ++ selectExtension (keyFilename source)
, keyBackendName = shaNameE size
}
selectExtension :: FilePath -> String
selectExtension f
| null es = ""
| otherwise = intercalate "." ("":es)
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where
es = filter (not . null) $ reverse $
take 2 $ takeWhile shortenough $
reverse $ split "." $ filter validExtension $ takeExtensions f
shortenough e = length e <= 4 -- long enough for "jpeg"
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{- A key's checksum is checked during fsck. -}
checkKeyChecksum :: SHASize -> Key -> FilePath -> Annex Bool
checkKeyChecksum size key file = do
fast <- Annex.getState Annex.fast
mstat <- liftIO $ catchMaybeIO $ getFileStatus file
case (mstat, fast) of
(Just stat, False) -> do
let filesize = fromIntegral $ fileSize stat
check <$> shaN size file filesize
_ -> return True
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where
sha = keySha key
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check s
| s == sha = True
{- A bug caused checksums to be prefixed with \ in some
- cases; still accept these as legal now that the bug has been
- fixed. -}
| '\\' : s == sha = True
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| otherwise = False
keySha :: Key -> String
keySha key = dropExtensions (keyName key)
validExtension :: Char -> Bool
validExtension c
| isAlphaNum c = True
| c == '.' = True
| otherwise = False
{- Upgrade keys that have the \ prefix on their sha due to a bug, or
- that contain non-alphanumeric characters in their extension. -}
needsUpgrade :: Key -> Bool
needsUpgrade key = "\\" `isPrefixOf` keySha key ||
any (not . validExtension) (takeExtensions $ keyName key)