diff --git a/TestAssets/NonRestoredTestProjects/PJAppWithXprojNameDifferentThanDirName/FolderHasDifferentName.sln b/TestAssets/NonRestoredTestProjects/PJAppWithXprojNameDifferentThanDirName/FolderHasDifferentName.sln
new file mode 100644
index 000000000..5fe171b9d
--- /dev/null
+++ b/TestAssets/NonRestoredTestProjects/PJAppWithXprojNameDifferentThanDirName/FolderHasDifferentName.sln
@@ -0,0 +1,22 @@
+
+Microsoft Visual Studio Solution File, Format Version 12.00
+# Visual Studio 14
+VisualStudioVersion = 14.0.25420.1
+MinimumVisualStudioVersion = 10.0.40219.1
+Project("{8BB2217D-0F2D-49D1-97BC-3654ED321F3B}") = "FolderHasDifferentName", "FolderHasDifferentName.xproj", "{0138CB8F-4AA9-4029-A21E-C07C30F425BA}"
+EndProject
+Global
+	GlobalSection(SolutionConfigurationPlatforms) = preSolution
+		Debug|Any CPU = Debug|Any CPU
+		Release|Any CPU = Release|Any CPU
+	EndGlobalSection
+	GlobalSection(ProjectConfigurationPlatforms) = postSolution
+		{0138CB8F-4AA9-4029-A21E-C07C30F425BA}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
+		{0138CB8F-4AA9-4029-A21E-C07C30F425BA}.Debug|Any CPU.Build.0 = Debug|Any CPU
+		{0138CB8F-4AA9-4029-A21E-C07C30F425BA}.Release|Any CPU.ActiveCfg = Release|Any CPU
+		{0138CB8F-4AA9-4029-A21E-C07C30F425BA}.Release|Any CPU.Build.0 = Release|Any CPU
+	EndGlobalSection
+	GlobalSection(SolutionProperties) = preSolution
+		HideSolutionNode = FALSE
+	EndGlobalSection
+EndGlobal
diff --git a/TestAssets/NonRestoredTestProjects/PJAppWithXprojNameDifferentThanDirName/FolderHasDifferentName.xproj b/TestAssets/NonRestoredTestProjects/PJAppWithXprojNameDifferentThanDirName/FolderHasDifferentName.xproj
new file mode 100644
index 000000000..d18702195
--- /dev/null
+++ b/TestAssets/NonRestoredTestProjects/PJAppWithXprojNameDifferentThanDirName/FolderHasDifferentName.xproj
@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="utf-8"?>
+<Project ToolsVersion="14.0.23107" DefaultTargets="Build" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
+  <PropertyGroup>
+    <VisualStudioVersion Condition="'$(VisualStudioVersion)' == ''">14.0.23107</VisualStudioVersion>
+    <VSToolsPath Condition="'$(VSToolsPath)' == ''">$(MSBuildExtensionsPath32)\Microsoft\VisualStudio\v$(VisualStudioVersion)</VSToolsPath>
+  </PropertyGroup>
+  <Import Project="$(VSToolsPath)\DNX\Microsoft.DNX.Props" Condition="'$(VSToolsPath)' != ''" />
+  <PropertyGroup Label="Globals">
+    <ProjectGuid>0138cb8f-4aa9-4029-a21e-c07c30f425ba</ProjectGuid>
+    <RootNamespace>TestAppWithContents</RootNamespace>
+    <BaseIntermediateOutputPath Condition="'$(BaseIntermediateOutputPath)'=='' ">..\..\..\artifacts\obj\$(MSBuildProjectName)</BaseIntermediateOutputPath>
+    <OutputPath Condition="'$(OutputPath)'=='' ">..\..\..\artifacts\</OutputPath>
+  </PropertyGroup>
+  <PropertyGroup>
+    <SchemaVersion>2.0</SchemaVersion>
+  </PropertyGroup>
+  <Import Project="$(VSToolsPath)\DNX\Microsoft.DNX.targets" Condition="'$(VSToolsPath)' != ''" />
+</Project>
diff --git a/TestAssets/NonRestoredTestProjects/PJAppWithXprojNameDifferentThanDirName/Program.cs b/TestAssets/NonRestoredTestProjects/PJAppWithXprojNameDifferentThanDirName/Program.cs
new file mode 100644
index 000000000..f6b060a91
--- /dev/null
+++ b/TestAssets/NonRestoredTestProjects/PJAppWithXprojNameDifferentThanDirName/Program.cs
@@ -0,0 +1,16 @@
+// Copyright (c) .NET Foundation and contributors. All rights reserved.
+// Licensed under the MIT license. See LICENSE file in the project root for full license information.
+
+using System;
+
+namespace TestApp
+{
+    public class Program
+    {
+        public static int Main(string[] args)
+        {
+            Console.WriteLine("Hello World");
+            return 0;
+        }
+    }
+}
diff --git a/TestAssets/NonRestoredTestProjects/PJAppWithXprojNameDifferentThanDirName/project.json b/TestAssets/NonRestoredTestProjects/PJAppWithXprojNameDifferentThanDirName/project.json
new file mode 100644
index 000000000..166d41c2b
--- /dev/null
+++ b/TestAssets/NonRestoredTestProjects/PJAppWithXprojNameDifferentThanDirName/project.json
@@ -0,0 +1,26 @@
+{
+  "version": "1.0.0-*",
+  "buildOptions": {
+    "emitEntryPoint": true,
+    "preserveCompilationContext": true
+  },
+  "dependencies": {
+    "Microsoft.NETCore.App": "1.0.1"
+  },
+  "frameworks": {
+    "netcoreapp1.0": {}
+  },
+  "runtimes": {
+    "win7-x64": {},
+    "win7-x86": {},
+    "osx.10.10-x64": {},
+    "osx.10.11-x64": {},
+    "ubuntu.14.04-x64": {},
+    "ubuntu.16.04-x64": {},
+    "centos.7-x64": {},
+    "rhel.7.2-x64": {},
+    "debian.8-x64": {},
+    "fedora.23-x64": {},
+    "opensuse.13.2-x64": {}
+  }
+}
diff --git a/src/dotnet/commands/dotnet-migrate/MigrateCommand.cs b/src/dotnet/commands/dotnet-migrate/MigrateCommand.cs
index 131a9c3c2..e49d7932a 100644
--- a/src/dotnet/commands/dotnet-migrate/MigrateCommand.cs
+++ b/src/dotnet/commands/dotnet-migrate/MigrateCommand.cs
@@ -131,6 +131,7 @@ namespace Microsoft.DotNet.Tools.Migrate
             }
 
             var csprojFilesToAdd = new HashSet<string>();
+            var xprojFilesToRemove = new HashSet<string>();
 
             var slnPathWithTrailingSlash = PathUtility.EnsureTrailingSlash(slnFile.BaseDirectory);
             foreach (var report in migrationReport.ProjectMigrationReports)
@@ -140,35 +141,35 @@ namespace Microsoft.DotNet.Tools.Migrate
                     slnPathWithTrailingSlash,
                     reportPathWithTrailingSlash);
 
-                var xprojPath = Path.Combine(relativeReportPath, report.ProjectName + ".xproj");
-                var xprojProjectsReferencedBySolution = slnFile.Projects.Where(p => p.FilePath == xprojPath);
-
                 var migratedProjectName = report.ProjectName + ".csproj";
-                if (xprojProjectsReferencedBySolution.Count() == 1)
-                {
-                    var slnProject = xprojProjectsReferencedBySolution.Single();
-                    slnProject.FilePath = Path.Combine(
-                        Path.GetDirectoryName(slnProject.FilePath),
-                        migratedProjectName);
-                    slnProject.TypeGuid = ProjectTypeGuids.CSharpProjectTypeGuid;
-                }
-                else
-                {
-                    var csprojPath = Path.Combine(relativeReportPath, migratedProjectName);
-                    var solutionContainsCsprojPriorToMigration = slnFile.Projects
-                        .Where(p => p.FilePath == csprojPath)
-                        .Any();
+                var csprojPath = Path.Combine(relativeReportPath, migratedProjectName);
+                var solutionContainsCsprojPriorToMigration = slnFile.Projects
+                    .Where(p => p.FilePath == csprojPath)
+                    .Any();
 
-                    if (!solutionContainsCsprojPriorToMigration)
-                    {
-                        csprojFilesToAdd.Add(Path.Combine(report.ProjectDirectory, migratedProjectName));
-                    }
+                if (!solutionContainsCsprojPriorToMigration)
+                {
+                    csprojFilesToAdd.Add(Path.Combine(report.ProjectDirectory, migratedProjectName));
                 }
 
                 foreach (var preExisting in report.PreExistingCsprojDependencies)
                 {
                     csprojFilesToAdd.Add(Path.Combine(report.ProjectDirectory, preExisting));
                 }
+
+                var projectDirectory = new DirectoryInfo(report.ProjectDirectory);
+                foreach (var xprojFileName in projectDirectory.EnumerateFiles("*.xproj"))
+                {
+                    var xprojPath = Path.Combine(relativeReportPath, xprojFileName.Name);
+                    var solutionContainsXprojFileToRemove = slnFile.Projects
+                        .Where(p => p.FilePath == xprojPath)
+                        .Any();
+
+                    if (solutionContainsXprojFileToRemove)
+                    {
+                        xprojFilesToRemove.Add(Path.Combine(report.ProjectDirectory, xprojFileName.Name));
+                    }
+                }
             }
 
             Version version;
@@ -185,7 +186,12 @@ namespace Microsoft.DotNet.Tools.Migrate
 
             foreach (var csprojFile in csprojFilesToAdd)
             {
-                AddProject(slnFile.FullPath, csprojFile);
+                RunDotnetSlnCommand(slnFile.FullPath, csprojFile, "add");
+            }
+
+            foreach (var xprojFile in xprojFilesToRemove)
+            {
+                RunDotnetSlnCommand(slnFile.FullPath, xprojFile, "remove");
             }
         }
 
@@ -209,19 +215,19 @@ namespace Microsoft.DotNet.Tools.Migrate
             slnFile.RemoveEmptySolutionFolders();
         }
 
-        private void AddProject(string slnPath, string csprojPath)
+        private void RunDotnetSlnCommand(string slnPath, string projPath, string commandName)
         {
-            List<string> args = new List<string>()
+            var args = new List<string>()
                 {
                     "sln",
                     slnPath,
-                    "add",
-                    csprojPath,
+                    commandName,
+                    projPath,
                 };
 
             var dotnetPath = Path.Combine(AppContext.BaseDirectory, "dotnet.dll");
-            var addCommand = new ForwardingApp(dotnetPath, args);
-            addCommand.Execute();
+            var command = new ForwardingApp(dotnetPath, args);
+            command.Execute();
         }
 
         private void MoveProjectJsonArtifactsToBackup(MigrationReport migrationReport)
diff --git a/test/dotnet-migrate.Tests/GivenThatIWantToMigrateSolutions.cs b/test/dotnet-migrate.Tests/GivenThatIWantToMigrateSolutions.cs
index 30387fecc..b3c679a86 100644
--- a/test/dotnet-migrate.Tests/GivenThatIWantToMigrateSolutions.cs
+++ b/test/dotnet-migrate.Tests/GivenThatIWantToMigrateSolutions.cs
@@ -235,6 +235,25 @@ namespace Microsoft.DotNet.Migration.Tests
                 .Should().Pass();
         }
 
+        [Fact]
+        public void WhenXprojNameIsDifferentThanDirNameItGetsRemovedFromSln()
+        {
+            var projectDirectory = TestAssets
+                .Get("NonRestoredTestProjects", "PJAppWithXprojNameDifferentThanDirName")
+                .CreateInstance()
+                .WithSourceFiles()
+                .Root;
+
+            new DotnetCommand()
+                .WithWorkingDirectory(projectDirectory)
+                .Execute($"migrate")
+                .Should().Pass();
+
+            var slnFile = SlnFile.Read(Path.Combine(projectDirectory.FullName, "FolderHasDifferentName.sln"));
+            slnFile.Projects.Count.Should().Be(1);
+            slnFile.Projects[0].FilePath.Should().Be("PJAppWithXprojNameDifferentThanDirName.csproj");
+        }
+
         private void MigrateAndBuild(string groupName, string projectName, [CallerMemberName] string callingMethod = "", string identifier = "")
         {
             var projectDirectory = TestAssets