diff --git a/scripts/dotnet-cli-build/CompileTargets.cs b/scripts/dotnet-cli-build/CompileTargets.cs
index 567e4661d..88ad9c425 100644
--- a/scripts/dotnet-cli-build/CompileTargets.cs
+++ b/scripts/dotnet-cli-build/CompileTargets.cs
@@ -13,7 +13,7 @@ namespace Microsoft.DotNet.Cli.Build
     public class CompileTargets
     {
         public static readonly string CoreCLRVersion = "1.0.1-rc2-23811";
-        public static readonly string AppDepSdkVersion = "1.0.6-prerelease-00001";
+        public static readonly string AppDepSdkVersion = "1.0.6-prerelease-00003";
 
         public static readonly List<string> AssembliesToCrossGen = GetAssembliesToCrossGen();
 
diff --git a/src/dotnet/commands/dotnet-compile-native/appdep/project.json b/src/dotnet/commands/dotnet-compile-native/appdep/project.json
index 09ab884be..652976f99 100644
--- a/src/dotnet/commands/dotnet-compile-native/appdep/project.json
+++ b/src/dotnet/commands/dotnet-compile-native/appdep/project.json
@@ -5,7 +5,7 @@
     },
     "dependencies": {
         "NETStandard.Library": "1.0.0-rc2-23811",
-        "Microsoft.DotNet.AppDep":"1.0.6-prerelease-00001"
+        "Microsoft.DotNet.AppDep":"1.0.6-prerelease-00003"
     },
     "frameworks": {
         "dnxcore50": { }